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Protein Overview: CAF1M_ARATH

General Information:
Name(s) found: CAF1M_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75161464|sp|Q8VYD9.1|CAF1M_ARATH RecName: Full=CRS2-associated factor 1, mitochondrial; Flags: Precursor [NCBI NR]
  • gi|22329043|ref|NP_194830.2| RNA binding [Arabidopsis thaliana] [NCBI NR]
  • gi|20465409|gb|AAM20129.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18176015|gb|AAL59968.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana GN=At4g31010 PE=2 SV=1 [Swiss-Prot]
  • unknown protein [Arabidopsis thaliana]gi|18176015|gb|AAL59968.1| unknown protein [Arabidopsis thaliana]gi|22329043|ref|NP_194830.2| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DNA binding | chr4:15106714-15108452 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain-containing protein | chr4:15106708-15108446 FORWARD LENGTH=405 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 405 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IEA]
    Biological Process: biological_process [ND]
    Molecular Function: RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLIRLSRHN PSSFTLLTRR LHDQTISSSR LRDLYNFQSP PPLSSSASEN PDFNQKNNNK  60
   61 KKPKPQYRPP SSLEGVKTVH SDLPFDFRFS YTESCSNVRP IGLREPKYSP FGPDRLDREW 120
  121 TGVCAPAVNP KVESVDGVED PKLEEKRRKV REKIQGASLT EAERKFLVEL CQRNKTKRQV 180
  181 NLGRDGLTHN MLNDVYNHWK HAEAVRVKCL GVPTLDMKNV IFHLEDKTFG QVVSKHSGTL 240
  241 VLYRGRNYDP KKRPKIPLML WKPHEPVYPR LIKTTIDGLS IDETKAMRKK GLAVPALTKL 300
  301 AKNGYYGSLV PMVRDAFLVS ELVRIDCLGL ERKDYKKIGA KLRDLVPCIL VTFDKEQVVI 360
  361 WRGKDYKPPK EDDEYSSFIH RESSIDSDVD LSCSRGAQDS PDETT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..145] MSA 3.027997 View MSA. No confident structure predictions are available.
    2 View Details [146..265] PSI-BLAST 32.0 YhbY homologue HI1333
    3 View Details [266..405] PSI-BLAST 28.69897 hypothetical protein YhbY


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle