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Protein Overview: SDN3_ARATH

General Information:
Name(s) found: SDN3_ARATH [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
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  • Small RNA degrading nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 782 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA][ISS]
    Biological Process: NONE FOUND
    Molecular Function: nucleic acid binding [IEA]
    exonuclease activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHKLATAEK KLLVDLVKLV QKRGLEGENG GWKEFLNVYD KKLGSSLSDP ARRSNDVLVA  60
   61 FLLTFKKKED LQLIARVMQC GANRELIEKF KQETPDKETP EQRLVRLTIT HDDYPGNYTF 120
  121 PSYAEDWYVT ELGKKKSKVI KSTRMLSIDC EMVTCEDGSQ ALVRVGAVDR DLKVVLDKFV 180
  181 KPDKPVIDYK TDITGVTAED LERATLSVAD IQKKLRRFLS VGTILVGHGL HNDLQVLRID 240
  241 HARVIDTSYV FEFVDAPKTQ RPSLNNLCKS VLGQEVRMDG AAHNCVHDAA AAMKLVLAAV 300
  301 EKGAATLIQP TEEMMVAEKR RQEARQEAGK AQLFLHKIPH DVPSEELHGV LSGNFTLVVK 360
  361 PPKTGGYSTA VVDFSSPEEA NEAFENVEGD VAKDKSGLPQ KKAVLKLSSG LAVSLFVRKM 420
  421 VQDDSPCEIS TSERARAEEN NVSSKRQKTE DETEETKEAT VNQREADKTK LFLHKIPHDV 480
  481 PSQELHGVLN GDFTLDVKPP KRKGGYYNAV VDFNSPEEAN EAFENVEGDV VKDKTGLPQK 540
  541 MVVFKLSSGS GVSLYVRKMV HDDSPGEIST TKRARTEESN MSSKRQKTED ESEETKEANA 600
  601 KQREADKTKL LLHKIPLNVP SQELKVVITG QFTLEVMPPK RKGRYYNAVV TFNSPEEANK 660
  661 AFEKVKGEAV KEKGGLAQKM VAFKLSSGSG ACLYVRKMVQ DESEETKEAN ANHCEDDHLK 720
  721 EMEELKEKLK AMEFAISCEG HSKEIEELKQ KLNAKEHQIQ AQDKIIANLK MKLEKKQSKS 780
  781 RS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..69] deduced N/A No confident structure predictions are available.
    2 View Details [70..142] PSI-BLAST 5.522879 No description for 1zbuA was found.
    3 View Details [143..308] PSI-BLAST 31.09691 No description for 2p1jA was found.
    4 View Details [309..433] deduced N/A No confident structure predictions are available.
    5 View Details [434..688] PSI-BLAST 9.69897 No description for 2ghpA was found.
    6 View Details [689..782] PSI-BLAST 24.045757 Sex-lethal protein


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle