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View Structure Prediction Details

Protein: SDN3_ARATH
Organism: Arabidopsis thaliana
Length: 782 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for SDN3_ARATH.

Predicted Domain #1
Region A:
Residues: [1-69]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHKLATAEK KLLVDLVKLV QKRGLEGENG GWKEFLNVYD KKLGSSLSDP ARRSNDVLVA  60
   61 FLLTFKKKE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [70-142]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLQLIARVMQ CGANRELIEK FKQETPDKET PEQRLVRLTI THDDYPGNYT FPSYAEDWYV  60
   61 TELGKKKSKV IKS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.522879
Match: 1zbuA
Description: No description for 1zbuA was found.

Predicted Domain #3
Region A:
Residues: [143-308]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRMLSIDCEM VTCEDGSQAL VRVGAVDRDL KVVLDKFVKP DKPVIDYKTD ITGVTAEDLE  60
   61 RATLSVADIQ KKLRRFLSVG TILVGHGLHN DLQVLRIDHA RVIDTSYVFE FVDAPKTQRP 120
  121 SLNNLCKSVL GQEVRMDGAA HNCVHDAAAA MKLVLAAVEK GAATLI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.09691
Match: 2p1jA
Description: No description for 2p1jA was found.

Predicted Domain #4
Region A:
Residues: [309-433]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPTEEMMVAE KRRQEARQEA GKAQLFLHKI PHDVPSEELH GVLSGNFTLV VKPPKTGGYS  60
   61 TAVVDFSSPE EANEAFENVE GDVAKDKSGL PQKKAVLKLS SGLAVSLFVR KMVQDDSPCE 120
  121 ISTSE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [434-688]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RARAEENNVS SKRQKTEDET EETKEATVNQ READKTKLFL HKIPHDVPSQ ELHGVLNGDF  60
   61 TLDVKPPKRK GGYYNAVVDF NSPEEANEAF ENVEGDVVKD KTGLPQKMVV FKLSSGSGVS 120
  121 LYVRKMVHDD SPGEISTTKR ARTEESNMSS KRQKTEDESE ETKEANAKQR EADKTKLLLH 180
  181 KIPLNVPSQE LKVVITGQFT LEVMPPKRKG RYYNAVVTFN SPEEANKAFE KVKGEAVKEK 240
  241 GGLAQKMVAF KLSSG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.69897
Match: 2ghpA
Description: No description for 2ghpA was found.

Predicted Domain #6
Region A:
Residues: [689-782]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGACLYVRKM VQDESEETKE ANANHCEDDH LKEMEELKEK LKAMEFAISC EGHSKEIEEL  60
   61 KQKLNAKEHQ IQAQDKIIAN LKMKLEKKQS KSRS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.045757
Match: 3sxlA
Description: Sex-lethal protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle