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Protein Overview: SPT42_ARATH

General Information:
Name(s) found: SPT42_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75165197|sp|Q94C60.1|SPT42_ARATH RecName: Full=Transcription elongation factor SPT4 homolog 2 [NCBI NR]
  • gi|21536759|gb|AAM61091.1| unknown [Arabidopsis thaliana] [NCBI NR]
  • gi|18424735|ref|NP_568976.1| SPT42 (SPT4 HOMOLOG 2); positive transcription elongation factor/ zinc ion binding [Arabidopsis thaliana] [NCBI NR]
  • gi|17104635|gb|AAL34206.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|14334976|gb|AAK59665.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana GN=At5g63670 PE=2 SV=1 [Swiss-Prot]
  • unknown protein [Arabidopsis thaliana]gi|14334976|gb|AAK59665.1| unknown protein [Arabidopsis thaliana]gi|21536759|gb|AAM61091.1| unknown [Arabidopsis thaliana]gi|18424735|ref|NP_568976.1| transcription initiation protein-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Transcription elongation factor SPT4 homolog 2 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: SPT42 | SPT42 (SPT4 HOMOLOG 2); positive transcription elongation factor/ zinc ion binding | chr5:25505238-25506473 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Transcription elongation factor SPT4 homolog 2 [nr-271106-contam.fasta]
  • | Symbols: SPT42 | SPT4 homolog 2 | chr5:25488012-25489247 FORWARD LENGTH=116 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 116 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: positive regulation of transcription [IEA]
    Molecular Function: zinc ion binding [IEA]
    positive transcription elongation factor activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSAPAQIPT SFGHELRACL RCRLVKTYDQ FRDAGCENCP FFKMEEDHER IVEVTTPNFN  60
   61 GIISVMDPSR SWAARWLRIG KFAPGCYTLA VSEPLPEEMQ HLCQEERVQY VLPKRM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..116] PSI-BLAST 36.0 No description for 2exuA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle