YRC Public Data Repository - Protein Structure Prediction

Protein:	SPT42_ARATH
Organism:	Arabidopsis thaliana
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPT42_ARATH.

Description	E-value	Query Range	Subject Range
SPT41_ARATH - Transcription elongation factor SPT4 homolog 1 - Arabidopsis thaliana (Mouse-ear cress)	208.0	[0..1]	[116..1]
gi\|218200050 - gi\|218200050\|gb\|EEC82477.1\| hypothetical protein OsI_26922 [Oryza sativa Indica Group] gi\|22535674, gi\|... - gi\|50939337\|ref\|XP_479196.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|22535674\|d...	202.0	[0..3]	[116..18]
gi\|50758014 - gi\|50758014\|ref\|XP_415718.1\| PREDICTED: similar to hypothetical protein FLJ20315 [Gallus gallus]	184.0	[0..7]	[111..2122]
SPT4H_MACFA - Transcription elongation factor SPT4 OS=Macaca fascicularis GN=SUPT4H1 PE=3 SV=1 gi\|167773609 - gi\|167773609\|gb\|ABZ92239.1\| suppressor of Ty 4 homolog 1 (S. cerevisiae) [synthetic construct] tr\|G1U0W2\|G1U0W2... - pep:novel chromosome:oryCun2:19:29917532:29924222:1 gene:ENSOCUG00000025823 transcript:ENSOCUT000000... ENSCJAT00000033815 - null SUPT4H1 - suppressor of Ty 4 homolog 1 (S. cerevisiae) gi\|73966584 - gi\|73966584\|ref\|XP_853156.1\| PREDICTED: similar to Transcription initiation protein SPT4 homolog 1 i... gi\|205361137, gi... - gi\|62656744\|ref\|XP_213415.3\| PREDICTED: similar to Transcription elongation factor SPT4 1 (DRB sensi... SPT4H_BOVIN - Transcription elongation factor SPT4 OS=Bos taurus GN=SUPT4H1 PE=3 SV=1 gi\|109114496 - gi\|109114496\|ref\|XP_001106749.1\| PREDICTED: similar to Transcription elongation factor SPT4 1 (DRB s... gi\|114669547, gi... - gi\|114669549\|ref\|XP_001172699.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi\|114... SPT4A_MOUSE - Transcription elongation factor SPT4-A OS=Mus musculus GN=Supt4h1a PE=2 SV=1 gi\|149723988 - gi\|149723988\|ref\|XP_001503750.1\| PREDICTED: similar to suppressor of Ty 4 homolog 1 [Equus caballus]	181.0	[0..7]	[111..5]
SPT4H_PONPY - Transcription elongation factor SPT4 - Pongo pygmaeus (Orangutan) SPT4H_PONAB - Transcription elongation factor SPT4 OS=Pongo abelii GN=SUPT4H1 PE=3 SV=1	181.0	[0..7]	[111..5]
gi\|47223757 - gi\|47223757\|emb\|CAF98527.1\| unnamed protein product [Tetraodon nigroviridis]	181.0	[0..7]	[111..5]
SPT4H_DANRE - Transcription elongation factor SPT4 OS=Danio rerio GN=supt4h1 PE=3 SV=1	180.0	[0..7]	[110..5]
gi\|74204382 - gi\|74204382\|dbj\|BAE39944.1\| unnamed protein product [Mus musculus]	180.0	[0..7]	[111..5]

Back

Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSAPAQIPT SFGHELRACL RCRLVKTYDQ FRDAGCENCP FFKMEEDHER IVEVTTPNFN  60
   61 GIISVMDPSR SWAARWLRIG KFAPGCYTLA VSEPLPEEMQ HLCQEERVQY VLPKRM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	2exuA
Description:	No description for 2exuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits