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Protein Overview: gi|13430602, gi|...

General Information:
Name(s) found: gi|18410802 [NCBI NR]
gi|15293165 [NCBI NR]
gi|13430602 [NCBI NR]
Description(s) found:
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  • gi|18410802|ref|NP_565105.1| HhH-GPD base excision DNA repair family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15293165|gb|AAK93693.1| putative 3-methyladenine DNA glycosylase [Arabidopsis thaliana] [NCBI NR]
  • gi|13430602|gb|AAK25923.1|AF360213_1 putative 3-methyladenine DNA glycosylase [Arabidopsis thaliana] [NCBI NR]
  • putative 3-methyladenine DNA glycosylase [Arabidopsis thaliana]gi|13430602|gb|AAK25923.1| putative 3-methyladenine DNA glycosylase [Arabidopsis thaliana]gi|18410802|ref|NP_565105.1| HhH-GPD base excision DNA repair family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 HhH-GPD base excision DNA repair family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | HhH-GPD base excision DNA repair family protein | chr1:28238105-28240113 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative 3-methyladenine DNA glycosylase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | DNA glycosylase superfamily protein | chr1:28234444-28236452 FORWARD LENGTH=391 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • DNA-3-methyladenine glycosylase II OS=Arabidopsis thaliana GN=At1g75230 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of F4HXH4, DNA glycosylase superfamily protein OS=Arabidopsis thaliana GN=At1g75230 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 391 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA repair [IEA]
    base-excision repair [IEA]
    Molecular Function: catalytic activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEHSPSQPS SHTLPPNQPE SPNHETPNPI PPETNDDDSA SSAGVSGSIV SSTTIEAPQV  60
   61 TELGNVSSPP TKIPLRPRKI RKLSPDDDAS DGFNPEHNLS QMTTTKPATK SKLSQSRTVT 120
  121 VPRIQARSLT CEGELEAALH HLRSVDPLLA SLIDIHPPPT FETFQTPFLA LIRSILYQQL 180
  181 AAKAGNSIYT RFVALCGGEN GVVPENVLPL TPQQLRQIGV SGRKASYLHD LARKYQNGIL 240
  241 SDSGIVNMDE KSLFTMLTMV NGIGSWSVHM FMINSLHRPD VLPVNDLGVR KGVQMLNGME 300
  301 DLPRPSKMEQ LCEKWRPYRS VASWYLWRLI ESKNTPPNAA AATAGAALSF PQLEDIQQQE 360
  361 QEQQHQQHQQ QQPQLMDPLN NVFSIGAWGQ T

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..132] MSA 1.306993 View MSA. No confident structure predictions are available.
    2 View Details [133..391] PSI-BLAST 36.154902 No description for 2h56A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle