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Protein Overview: gi|18399149, gi|...

General Information:
Name(s) found: gi|18399149 [NCBI NR]
gi|14532756 [NCBI NR]
gi|13430550 [NCBI NR]
Description(s) found:
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  • gi|18399149|ref|NP_564438.1| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|14532756|gb|AAK64079.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|13430550|gb|AAK25897.1|AF360187_1 unknown protein [Arabidopsis thaliana] [NCBI NR]
  • unknown protein [Arabidopsis thaliana]gi|13430550|gb|AAK25897.1| unknown protein [Arabidopsis thaliana]gi|18399149|ref|NP_564438.1| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 TRNA pseudouridine synthase family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | tRNA pseudouridine synthase family protein | chr1:12436064-12439215 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • pseudouridylate synthase/ tRNA-pseudouridine synthase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • tRNA pseudouridine synthase family protein [Arabidopsis thaliana] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • | Symbols: | Pseudouridine synthase family protein | chr1:12436086-12439237 FORWARD LENGTH=446 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • tRNA pseudouridine synthase OS=Arabidopsis thaliana GN=At1g34150 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 446 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: pseudouridine synthesis [IEA]
    tRNA processing [IEA]
    Molecular Function: pseudouridine synthase activity [ISS][TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTISDAKSDP GGDDRDSEIA KETELVFLRN RVKELEVENA KLLSQVSSCQ CQQMEVKHDR  60
   61 SLSDSSSLVR RRRVRKGDKN SIPSHLISKR YVALKIMYFG KRFYGFSAEA QMEPSIESEV 120
  121 FKALERTRLL VGDKKDSCYS RCGRTDKGVS STGQVIALFL RSRLKSPPGD SKAQVNGRTG 180
  181 ERPEYDYVRV LNRALPDDIR VIGWSPAPID FHARFSCYAR EYKYFFWRQN LNLSAMDFAG 240
  241 KKFIGEHDFR NFCKMDVANV HCYTRRVTFF EVSPCQNSHE GDQLCTFTMR GSAFLWHQIR 300
  301 CMVAVLFMIG QGVESVDVID TLLDTKKTPR KPQYLLASEI PLVLRTCEFE NVDFICSPGA 360
  361 AESLRSHFKN ESLTYQLESV IYQEALRNCL PLSNNVSTEE SSCNGVEKKK KRAEHVPLLS 420
  421 RPTEPSYEER TAKLKPRKEE TLACVV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..88] deduced N/A No confident structure predictions are available.
    2 View Details [89..356] PSI-BLAST 75.69897 No description for 2nqpA was found.
    3 View Details [357..446] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle