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Protein Overview: gi|30691669, gi|...

General Information:
Name(s) found: gi|90093284 [NCBI NR]
gi|30691669 [NCBI NR]
gi|26450142 [NCBI NR]
Description(s) found:
Found 12 descriptions.
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  • gi|90093284|gb|ABD85155.1| At4g38020 [Arabidopsis thaliana] [NCBI NR]
  • gi|30691669|ref|NP_195515.2| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|26450142|dbj|BAC42190.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 352 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: RNA processing [IEA][ISS]
    Molecular Function: RNA methyltransferase activity [IEA][ISS]
    RNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHCGCVFASQ TVSSLLPFEI KTYASKLRAS SAQLPRTQIQ INPSDDLSIY GSDKSPANRV  60
   61 SLPSHVNSIT STTNPFVKHC LKLRQSSSYR HAHGSVLVVG TIPIREVCMF QTNKQGMTTE 120
  121 IECLLLHEEA KIPQGLESLS IRIVRVSSLV MKKLSGVQST ESVEAIALMR IPSSFTDLKD 180
  181 DKDIITDCNK WFPSAHRVLV LDSIQDPGNL GTLVRSAMAF NWDGAFLLPG CCDPYNDKAL 240
  241 RASRGASFQL PIVSGNWNHL KLLENEFQMK LLAGHPATTT QKLKPVSKLS VEFAQSLAEK 300
  301 PLCLILGSEG NGLSEQARKV CVLVSIPMAG DFESLNVSVA GGIFLYMLQN LV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..63] deduced N/A No confident structure predictions are available.
    2 View Details [64..352] PSI-BLAST 57.69897 RlmB, C-terminal domain; RlmB, N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • RNA methyltransferase activity
    		•  4.77771076540343 bayes_pls_golite062009
  • methyltransferase activity
    		•  4.0901595540349 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  4.01958090893547 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  2.59156540645412 bayes_pls_golite062009
  • tRNA methyltransferase activity
    		•  2.52700462137917 bayes_pls_golite062009
  • tRNA (guanine) methyltransferase activity
    		•  2.29844424181442 bayes_pls_golite062009
  • tRNA (guanine-N1-)-methyltransferase activity
    		•  2.0947794364355 bayes_pls_golite062009
  • rRNA methyltransferase activity
    		•  1.86192852581774 bayes_pls_golite062009
  • transferase activity
    		•  1.84002196534744 bayes_pls_golite062009
  • catalytic activity
    		•  1.16774040077235 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  0.0655574594365502 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle