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Protein Overview: gi|26450026, gi|...

General Information:
Name(s) found: gi|7438330 [NCBI NR]
gi|41619088 [NCBI NR]
gi|28827526 [NCBI NR]
gi|26450026 [NCBI NR]
gi|15223917 [NCBI NR]
Description(s) found:
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  • pir||T00737 myb-related protein F22O13.32 - Arabidopsis thaliana [NCBI NR]
  • gi|41619088|gb|AAS10021.1| MYB transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|28827526|gb|AAO50607.1| putative myb family transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|26450026|dbj|BAC42133.1| putative transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|15223917|ref|NP_172358.1| MYB60 (myb domain protein 60); DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • putative transcription factor [Arabidopsis thaliana]gi|28827526|gb|AAO50607.1| putative myb family transcription factor [Arabidopsis thaliana]gi|15223917|ref|NP_172358.1| myb family transcription factor (MYB60) [Arabidopsis thaliana]gi|41619088|gb|AAS1 [nrdb_11152004_Chlamydomonas]
  • | Symbols: AtMYB60, MYB60 | MYB60 (myb domain protein 60); DNA binding / transcription factor | chr1:2819282-2820332 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • MYB60; DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • MYB transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative myb family transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: MYB60, AtMYB60 | myb domain protein 60 | chr1:2819279-2820329 REVERSE LENGTH=280 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • MYB transcription factor OS=Arabidopsis thaliana GN=At1g08810/F22O13_32 PE=2 SV=1 [ARATH-contam.fasta]
  • MYB transcription factor OS=Arabidopsis thaliana GN=MYB60 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 280 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: response to abscisic acid stimulus [IMP]
    regulation of transcription, DNA-dependent [ISS]
    response to jasmonic acid stimulus [IEP]
    stomatal movement [IMP]
    response to salicylic acid stimulus [IEP]
    response to light stimulus [IEP]
    response to water deprivation [IEP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS][TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY  60
   61 LRPGIKRGNF TPHEEGMIIH LQALLGNKWA SIASYLPQRT DNDIKNYWNT HLKKKLNKSD 120
  121 SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ 180
  181 NRTNNFIDHH SDQFPYEQLQ GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD 240
  241 DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..109] PSI-BLAST 33.0 c-Myb, DNA-binding domain
    2 View Details [110..280] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle