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Protein Overview: gi|30678076, gi|...

General Information:
Name(s) found: gi|87116652 [NCBI NR]
gi|30678076 [NCBI NR]
gi|26449445 [NCBI NR]
Description(s) found:
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  • gi|87116652|gb|ABD19690.1| At2g03780 [Arabidopsis thaliana] [NCBI NR]
  • gi|30678076|ref|NP_178473.2| translin family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|26449445|dbj|BAC41849.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • unknown protein [Arabidopsis thaliana]gi|30678076|ref|NP_178473.2| translin family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: | translin family protein | chr2:1152713-1154282 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At2g03780 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Translin family protein | chr2:1152716-1154285 REVERSE LENGTH=287 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At2g03780 OS=Arabidopsis thaliana GN=At2g03780/F19B11.23 PE=2 SV=1 [ARATH-contam.fasta]
  • At2g03780 OS=Arabidopsis thaliana GN=At2g03780 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 287 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: biological_process [ND]
    Molecular Function: DNA binding [ISS]
    sequence-specific DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSCSSSAFQ RVAFMLMAPK LKPQRLHQIA ESGVEHLVKK ARTMSTESSM KDAFSTYADY  60
   61 LNNFNEKRER VVKVSRDITM NSKKVIFQVH RLSKDNKEEV LEKAGKDLEA VRDQHFARLM 120
  121 KELQGTDFWK LRRAYSPGVQ EYVEAATFYK FCLSGTLCTL DEINTTLVPL SDPSLEPLQI 180
  181 NILDYILGLA DLTGELMRMA IGRISDGEIE FAQRICQFVR QIHRELMLVV PKMDDSYDMK 240
  241 SKMEVMLQSV IKIENACFSV HVRGLEYIPL LGDNAPTSYL LGAADVE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..287] PSI-BLAST 64.045757 Testis/brain RNA-binding protein (TB-RBP)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.15914251877115 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.856432090295517 bayes_pls_golite062009
  • DNA binding
    		•  0.0129149007335991 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle