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Protein Overview: UBCP_ARATH

General Information:
Name(s) found: UBCP_ARATH [Swiss-Prot]
Description(s) found:
Found 9 descriptions.
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  • Ubiquitin-like domain-containing CTD phosphatase OS=Arabidopsis thaliana GN=At4g06599 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 340 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: protein modification process [IEA]
    Molecular Function: phosphoprotein phosphatase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSSSPTP SAAAAVSPLT EEELTLTVKW NGKEYTVRIC ADDSVAELKR RICLLTTVLP  60
   61 KRQKLLYPKI GNKLSDDSLL LSSISFKPSL KMTMIGTVED DIIVDQAESP EIVDDFELGK 120
  121 EEAVDVKDKE VNKQKLRRRI DQYKINLRTP CRQGKKLLVL DIDYTLFDHR STAENPLQLM 180
  181 RPYLHEFLTA AYAEYDIMIW SATSMKWVEL KMTELGVLNN PNYKVTALLD HLAMITVQSD 240
  241 TRGIFDCKPL GLIWALLPEF YNPGNTIMFD DLRRNFVMNP QNGLTIKPFR KAHANRDTDQ 300
  301 ELVKLTQYLL TIAELSDLSS LHHSRWESFS QDNVKRRRQE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..142] PSI-BLAST 6.30103 Structure of the DNA repair protein hHR23a
    2 View Details [143..340] PSI-BLAST 39.0 Three-dimensional structure of a RNA-polymerase II binding protein with associated ligand.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0934358341245259 bayes_pls_golite062009
  • protein binding
    		•  0.03789551947602 bayes_pls_golite062009
    2
    Term Confidence Notes
  • catalytic activity
    		•  1.02290994020378 bayes_pls_golite062009
  • hydrolase activity
    		•  0.71914501009647 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.62

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle