YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: NUP96_ARATH

General Information:
Name(s) found: NUP96_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|61353788|gb|AAX44044.1| putative nucleoporin 96 [Arabidopsis thaliana] [NCBI NR]
  • gi|30699531|ref|NP_178183.2| SAR3 (SUPPRESSOR OF AUXIN RESISTANCE 3); porin [Arabidopsis thaliana] [NCBI NR]
  • gi|22652299|gb|AAN03676.1|AF411839_1 putative nucleoporin PRECOZ [Arabidopsis thaliana] [NCBI NR]
  • Nuclear pore complex protein NUP96 OS=Arabidopsis thaliana GN=NUP96 PE=1 SV=1 [Swiss-Prot]
  • putative nucleoporin PRECOZ [Arabidopsis thaliana]gi|30699531|ref|NP_178183.2| nucleoporin family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Nucleoporin family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: SAR3, MOS3, PRE | MOS3/PRE/SAR3 (SUPPRESSOR OF AUXIN RESISTANCE3); porin | chr1:30329111-30333381 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative nucleoporin 96 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative nucleoporin PRECOZ [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • PRE (PRECOZ) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SAR3, MOS3, PRE, NUP96 | SUPPRESSOR OF AUXIN RESISTANCE 3 | chr1:30324219-30328489 FORWARD LENGTH=1046 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative nucleoporin 96 OS=Arabidopsis thaliana GN=PRE PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1046 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    nuclear membrane [IDA]
    Biological Process: mRNA export from nucleus [IGI]
    defense response signaling pathway, resistance gene-dependent [IMP]
    negative regulation of flower development [NAS]
    response to auxin stimulus [IGI]
    Molecular Function: porin activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLSIQPFP EISRMARDLD SRKKRRISLD GIAALCEHSK EIIDSLPMLN SPDYFLKPCI  60
   61 NELVEREIES PDYCSRVPDF TIGRIGYGYI RFLGNTDVRR LDLDHIVKFH RHEVIVYDDE 120
  121 SSKPVVGEGL NKAAEVTLVV NIPDLTWGKQ QVNHIAYKLK QSTERQGATF ISFDPDNGLW 180
  181 KFFVPHFSRF GLSDDEAEDI AMDDAPGLGD PVGLDGKKVA DIDEEDQMET SELELSHSLP 240
  241 AHLGLDPEKM KEMRMLMFPN EDEDESEDFR EQTSHLMTSL TKRNVRPSQK IAQRNSHQDP 300
  301 PPVVRKTPLA LLEYNPGNDK SSPGSILMVQ QNKNLAVRKS KTGGFELDIS HVTPLTDNYS 360
  361 RNVVDAALFM GRSFRAGWGP NGVLFHTGKP ICSSSSQMVL SSVINKEKIA IDKVVWDRKG 420
  421 KVQKELIDSA FEAPLSLHKE LNHVEEEVRF GSFSLKLQNV VTDRVVLSDI CRSYIGIIEK 480
  481 QLEVAGLSTS AKLFLMHQVM VWELIKVLFS ERQSTERLMY AASDNEEDVM QDVKEDSAKI 540
  541 DTEALPLIRR AEFSCWLQES VSHRVQEDVS DLNGSSYLEH LFFLLTGREL DSAVELAISK 600
  601 GDVRLACLLS QAGGSTVNRN DILQQLHLWR RNGLDFNFIE KERIKLYELL AGNIHDALQD 660
  661 FTIDWKRFLG LLMWHHLPPD SSLPIIFRSY QLLLNQAKAP WPVPIYIDEG PADGFVSDNK 720
  721 HSDILYYLML LHSKEEEEFG FLQTMFSAFS STDDPLDYHM IWHHRGILEA VGAFTSDDLH 780
  781 TLDMGFVAQL LSQGLCHWAI YVVLHIPFRE DHPYLHVTVI REILFQYCET WSSMESQRQF 840
  841 IKDLGIPSEW MHEALAVYYN YHGDFVKALD QFIECANWQR AHSIFMTSVA HSLFLSANHS 900
  901 EIWRIATSMD DRKSEIENWD LGAGIYMSFY LLKSSLQEDA DTMVELEPLD STNESCRNFV 960
  961 GRLNESLAVW GDRLPVEARV AYSKMAEEIC DLLLSDLSKN PSRETQLTCF ETAFDAPLPE1020
 1021 DVRSTHLQDA VSLFSLYLSE TGQISA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..187] PSI-BLAST 63.09691 C-terminal autoproteolytic domain of nucleoporin nup98
    2 View Details [188..291] deduced N/A No confident structure predictions are available.
    3 View Details [292..437] MSA 1.050984 View MSA. No confident structure predictions are available.
    4 View Details [438..889] PSI-BLAST 59.522879 No description for 3bg0B was found.
    5 View Details [890..1046] MSA 2.047974 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle