| Protein: | NUP96_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 1046 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUP96_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
1060.0 | [0..1] | [1046..1] |
|
|
1055.0 | [0..1] | [1042..671] |
|
|
1053.0 | [0..1] | [1042..688] |
|
|
1037.0 | [0..1] | [1041..688] |
|
|
1036.0 | [0..3] | [1041..673] |
|
|
990.0 | [0..1] | [1041..81] |
|
Region A: Residues: [1-187] |
1 11 21 31 41 51
| | | | | |
1 MTSLSIQPFP EISRMARDLD SRKKRRISLD GIAALCEHSK EIIDSLPMLN SPDYFLKPCI 60
61 NELVEREIES PDYCSRVPDF TIGRIGYGYI RFLGNTDVRR LDLDHIVKFH RHEVIVYDDE 120
121 SSKPVVGEGL NKAAEVTLVV NIPDLTWGKQ QVNHIAYKLK QSTERQGATF ISFDPDNGLW 180
181 KFFVPHF
|
| Detection Method: |  |
| Confidence: | 63.09691 |
| Match: | 1ko6A |
| Description: | C-terminal autoproteolytic domain of nucleoporin nup98 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [188-291] |
1 11 21 31 41 51
| | | | | |
1 SRFGLSDDEA EDIAMDDAPG LGDPVGLDGK KVADIDEEDQ METSELELSH SLPAHLGLDP 60
61 EKMKEMRMLM FPNEDEDESE DFREQTSHLM TSLTKRNVRP SQKI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [292-437] |
1 11 21 31 41 51
| | | | | |
1 AQRNSHQDPP PVVRKTPLAL LEYNPGNDKS SPGSILMVQQ NKNLAVRKSK TGGFELDISH 60
61 VTPLTDNYSR NVVDAALFMG RSFRAGWGPN GVLFHTGKPI CSSSSQMVLS SVINKEKIAI 120
121 DKVVWDRKGK VQKELIDSAF EAPLSL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [438-889] |
1 11 21 31 41 51
| | | | | |
1 HKELNHVEEE VRFGSFSLKL QNVVTDRVVL SDICRSYIGI IEKQLEVAGL STSAKLFLMH 60
61 QVMVWELIKV LFSERQSTER LMYAASDNEE DVMQDVKEDS AKIDTEALPL IRRAEFSCWL 120
121 QESVSHRVQE DVSDLNGSSY LEHLFFLLTG RELDSAVELA ISKGDVRLAC LLSQAGGSTV 180
181 NRNDILQQLH LWRRNGLDFN FIEKERIKLY ELLAGNIHDA LQDFTIDWKR FLGLLMWHHL 240
241 PPDSSLPIIF RSYQLLLNQA KAPWPVPIYI DEGPADGFVS DNKHSDILYY LMLLHSKEEE 300
301 EFGFLQTMFS AFSSTDDPLD YHMIWHHRGI LEAVGAFTSD DLHTLDMGFV AQLLSQGLCH 360
361 WAIYVVLHIP FREDHPYLHV TVIREILFQY CETWSSMESQ RQFIKDLGIP SEWMHEALAV 420
421 YYNYHGDFVK ALDQFIECAN WQRAHSIFMT SV
|
| Detection Method: | |
| Confidence: | 59.522879 |
| Match: | 3bg0B |
| Description: | No description for 3bg0B was found. |
|
Region A: Residues: [890-1046] |
1 11 21 31 41 51
| | | | | |
1 AHSLFLSANH SEIWRIATSM DDRKSEIENW DLGAGIYMSF YLLKSSLQED ADTMVELEPL 60
61 DSTNESCRNF VGRLNESLAV WGDRLPVEAR VAYSKMAEEI CDLLLSDLSK NPSRETQLTC 120
121 FETAFDAPLP EDVRSTHLQD AVSLFSLYLS ETGQISA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
