Protein Overview: gi|253325058, gi...

General Information:
Name(s) found:	gi\|254287879 [NCBI NR] gi\|253977186 [NCBI NR] gi\|253774014 [NCBI NR] gi\|253325058 [NCBI NR]
Description(s) found: SHOW ONLY BEST	gi\|254287879\|ref\|YP_003053627.1\| outer membrane protein A (3a;II;G;d) [Escherichia coli BL21(DE3)] [NCBI NR] gi\|253977186\|gb\|ACT42856.1\| outer membrane protein A (3a;II;G;d) [Escherichia coli BL21(DE3)] [NCBI NR] gi\|253774014\|ref\|YP_003036845.1\| OmpA domain protein transmembrane region-containing protein [Escherichia coli BL21(DE3)] [NCBI NR] gi\|253325058\|gb\|ACT29660.1\| OmpA domain protein transmembrane region-containing protein [Escherichia coli BL21(DE3)] [NCBI NR] OmpA domain protein transmembrane region-containing protein [Escherichia coli BL21(DE3)] [NCBI-RefSeq_E_coli_08-17-2010_reversed.fasta] outer membrane protein A (3a;II*;G;d) [Escherichia coli BL21(DE3)] [E_coli_BL21_DE3_12-28-2012_sp6_AA_contam.fasta]
Organism:	Escherichia coli BL21(DE3)
Length:	346 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	NONE FOUND
Molecular Function:	NONE FOUND

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKTAIAIAV ALAGFATVAQ AAPKDNTWYT GAKLGWSQYH DTGFINNNGP THENQLGAGA  60
   61 FGGYQVNPYV GFEMGYDWLG RMPYKGSVEN GAYKAQGVQL TAKLGYPITD DLDIYTRLGG 120
  121 MVWRADTKSN VYGKNHDTGV SPVFAGGVEY AITPEIATRL EYQWTNNIGD AHTIGTRPDN 180
  181 GMLSLGVSYR FGQGEAAPVV APAPAPAPEV QTKHFTLKSD VLFNFNKATL KPEGQAALDQ 240
  241 LYSQLSNLDP KDGSVVVLGY TDRIGSDAYN QGLSERRAQS VVDYLISKGI PADKISARGM 300
  301 GESNPVTGNT CDNVKQRAAL IDCLAPDRRV EIEVKGIKDV VTQPQA

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
porin activity	5.10991724700971	bayes_pls_golite062009
channel activity	4.78965126968592	bayes_pls_golite062009
passive transmembrane transporter activity	4.78965126968592	bayes_pls_golite062009
wide pore channel activity	3.92328965238944	bayes_pls_golite062009
transporter activity	2.94995161862691	bayes_pls_golite062009
transmembrane transporter activity	2.84443650880263	bayes_pls_golite062009
receptor activity	1.96745124806322	bayes_pls_golite062009
signal transducer activity	1.14131647544827	bayes_pls_golite062009
molecular transducer activity	1.14131647544827	bayes_pls_golite062009
binding	0.881171786743586	bayes_pls_golite062009
protein binding	0.251915221742479	bayes_pls_golite062009

Term	Confidence	Notes
binding	0.708705497872653	bayes_pls_golite062009
protein binding	0.0802304930997709	bayes_pls_golite062009

Source: Reynolds et al. 2008. Manuscript submitted

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..206]	PSI-BLAST	23.09691	Outer membrane protein A (OMPA) transmembrane domain
2	View Details	[207..346]	PSI-BLAST	25.09691	Structure of the OmpA-like domain of RmpM from Neisseria meningitidis

Protein Overview: gi|253325058, gi...

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: