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Protein Overview: LIPB_ARATH

General Information:
Name(s) found: LIPB_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|79316647|ref|NP_001030961.1| LIP2 (LIPOYLTRANSFERASE 2); lipoyltransferase [Arabidopsis thaliana] [NCBI NR]
  • gi|75213274|sp|Q9SXP7.1|LIPB_ARATH RecName: Full=Octanoyltransferase; AltName: Full=Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase; AltName: Full=Lipoyl/octanoyl transferase; AltName: Full=Lipoate-protein ligase; AltName: Full=Lipoate biosy [NCBI NR]
  • gi|4996286|dbj|BAA78386.1| lipoyltransferase [Arabidopsis thaliana] [NCBI NR]
  • gi|22137226|gb|AAM91458.1| At1g04640/T1G11_10 [Arabidopsis thaliana] [NCBI NR]
  • gi|16226271|gb|AAL16120.1|AF428288_1 At1g04640/T1G11_10 [Arabidopsis thaliana] [NCBI NR]
  • gi|15219770|ref|NP_171958.1| LIP2 (LIPOYLTRANSFERASE 2); lipoyltransferase [Arabidopsis thaliana] [NCBI NR]
  • Octanoyltransferase OS=Arabidopsis thaliana GN=LIP2 PE=2 SV=1 [Swiss-Prot]
  • At1g04640/T1G11_10 [Arabidopsis thaliana]gi|16226271|gb|AAL16120.1| At1g04640/T1G11_10 [Arabidopsis thaliana]gi|15219770|ref|NP_171958.1| biotin/lipoate A/B protein ligase family protein [Arabidopsis thaliana]gi|4996286|dbj|BAA78386.1| lipoyltransferas [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Biotin/lipoate A/B protein ligase family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: LIP2 | LIP2 (LIPOYLTRANSFERASE 2) | chr1:1292540-1293247 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • LIP2 (LIPOYLTRANSFERASE 2) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Lipoate-protein ligase (Lipoate biosynthesis protein) (Lipoyl ligase) [nr-271106-contam.fasta]
  • At1g04640/T1G11_10 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • lipoyltransferase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: LIP2 | lipoyltransferase 2 | chr1:1292541-1293248 FORWARD LENGTH=235 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 235 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDA]
    Biological Process: lipoic acid metabolic process [IGI]
    Molecular Function: lipoyltransferase activity [IGI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSPRTLEVW KLGTVNYLKS LKLQEKLVSE RKAHQIPDTL LSLQHPPTYT LGKRRTDHNL  60
   61 LIPESELTKI GAELHYTQRG GDITFHGPHQ AILYPIISLR SIGFGARNYV ETLERSMIEF 120
  121 ASIYGVKARA GNKCETGVWV GDRKIGAIGV RISSGITSHG LALNIDPDMK YFEHIVPCGI 180
  181 ADKEVTSLRR ETDTLLPSEE VIHEQLVSCL AKAFSYDDVV WKEDPSLILD TQDKE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..235] PSI-BLAST 47.69897 Title withheld

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • aminoacyl-tRNA ligase activity
    		•  4.025601351766 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  4.02412423650651 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  4.02412423650651 bayes_pls_golite062009
  • ligase activity
    		•  3.51191116674556 bayes_pls_golite062009
  • catalytic activity
    		•  1.99372273395202 bayes_pls_golite062009
  • phenylalanine-tRNA ligase activity
    		•  0.91205340076545 bayes_pls_golite062009
  • binding
    		•  0.521863822270226 bayes_pls_golite062009
  • serine-tRNA ligase activity
    		•  0.410923263101581 bayes_pls_golite062009
  • glycine-tRNA ligase activity
    		•  0.25613083187245 bayes_pls_golite062009
  • ATP binding
    		•  0.18403217430648 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.145955341735342 bayes_pls_golite062009
  • threonine-tRNA ligase activity
    		•  0.133891091298639 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.127823774098159 bayes_pls_golite062009
  • protein binding
    		•  0.0101455326199739 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle