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Protein Overview: gi|17065112, gi|...

General Information:
Name(s) found: gi|22136090 [NCBI NR]
gi|17065112 [NCBI NR]
gi|15219328 [NCBI NR]
Description(s) found:
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  • gi|22136090|gb|AAM91123.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|17065112|gb|AAL32710.1| Unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15219328|ref|NP_173116.1| HCF173 (high chlorophyll fluorescence phenotype 173); binding / catalytic/ transcription repressor [Arabidopsis thaliana] [NCBI NR]
  • unknown protein [Arabidopsis thaliana]gi|17065112|gb|AAL32710.1| Unknown protein [Arabidopsis thaliana]gi|15219328|ref|NP_173116.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: HCF173 | HCF173 (HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173); binding / catalytic/ oxidoreductase/ transcription repressor | chr1:5723154-5726241 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • oxidoreductase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: HCF173 | high chlorophyll fluorescence phenotype 173 | chr1:5723161-5726248 FORWARD LENGTH=598 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • High chlorophyll fluorescence phenotype 173 protein OS=Arabidopsis thaliana GN=F17F16.7 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 598 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    chloroplast envelope [IDA]
    Biological Process: translational initiation [IMP]
    Molecular Function: catalytic activity [IEA]
    binding [IEA]
    transcription repressor activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGSIVGSNM AATDARFLSS NFGNSFSINT RIHRFHDRSQ IVIPRAQSSS SPSPSPPSDK  60
   61 KKTKTRPGTI TTKESEETVA KKLDVAPPSP QSPPSPPTLK LDDVNPVGLG RRSRQIFDEV 120
  121 WRKFSGLGQM SRTTRPDEQE TLDSLLIREG PMCEFAVPGA QNVTVLVVGA TSRIGRIVVR 180
  181 KLMLRGYTVK ALVRKQDEEV MSMLPRSVDI VVGDVGEPST LKSAVESCSK IIYCATARST 240
  241 ITADLTRVDH LGVYNLTKAF QDYNNRLAQL RAGKSSKSKL LLAKFKSAES LDGWEIRQGT 300
  301 YFQDTTASKY DGGMDAKFEF TETERAEFSG YVFTRGGYVE LSKKLSLPLG TTLDRYEGLV 360
  361 LSVGGNGRSY VVILEAGPSS DMSQSKQYFA RISTKAGFCR VRVPFSAFRP VNPEDPPLDP 420
  421 FLVHTLTIRF EPKRQRPVDG LAGAQQDLRS FSLVFEYIKA LPAGQETDFI LVSCTGSGVE 480
  481 ANRREQVLKA KRAGEDSLRR SGLGYTIIRP GPLKEEPGGQ RALIFDQGNR ISQGISCADV 540
  541 ADICVKALHD STARNKSFDV CHEYVAEQGI ELYELVAHLP DKANNYLTPA LSVLEKNT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..478] PSI-BLAST 28.154902 Crystal structure of full length ArnA
    2 View Details [479..598] PSI-BLAST 45.69897 Crystal structure of the gal10 fusion protein galactose mutarotase/UDP-galactose 4-epimerase from Saccharomyces cerevisiae complexed with NAD, UDP-glucose, and galactose


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle