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View Structure Prediction Details

Protein: gi|17065112, gi|...
Organism: Arabidopsis thaliana
Length: 598 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17065112, gi|....

Description E-value Query
Range
Subject
Range
gi|9954733, gi|2... - gi|9954733|gb|AAG09086.1|AC026237_7 Unknown Protein [Arabidopsis thaliana], pir||F86302 hypothetical...
230.0 [0..10] [598..1]

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Predicted Domain #1
Region A:
Residues: [1-478]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGSIVGSNM AATDARFLSS NFGNSFSINT RIHRFHDRSQ IVIPRAQSSS SPSPSPPSDK  60
   61 KKTKTRPGTI TTKESEETVA KKLDVAPPSP QSPPSPPTLK LDDVNPVGLG RRSRQIFDEV 120
  121 WRKFSGLGQM SRTTRPDEQE TLDSLLIREG PMCEFAVPGA QNVTVLVVGA TSRIGRIVVR 180
  181 KLMLRGYTVK ALVRKQDEEV MSMLPRSVDI VVGDVGEPST LKSAVESCSK IIYCATARST 240
  241 ITADLTRVDH LGVYNLTKAF QDYNNRLAQL RAGKSSKSKL LLAKFKSAES LDGWEIRQGT 300
  301 YFQDTTASKY DGGMDAKFEF TETERAEFSG YVFTRGGYVE LSKKLSLPLG TTLDRYEGLV 360
  361 LSVGGNGRSY VVILEAGPSS DMSQSKQYFA RISTKAGFCR VRVPFSAFRP VNPEDPPLDP 420
  421 FLVHTLTIRF EPKRQRPVDG LAGAQQDLRS FSLVFEYIKA LPAGQETDFI LVSCTGSG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.154902
Match: 1z7eA
Description: Crystal structure of full length ArnA
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [479-598]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEANRREQVL KAKRAGEDSL RRSGLGYTII RPGPLKEEPG GQRALIFDQG NRISQGISCA  60
   61 DVADICVKAL HDSTARNKSF DVCHEYVAEQ GIELYELVAH LPDKANNYLT PALSVLEKNT 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.69897
Match: 1z45A
Description: Crystal structure of the gal10 fusion protein galactose mutarotase/UDP-galactose 4-epimerase from Saccharomyces cerevisiae complexed with NAD, UDP-glucose, and galactose
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle