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Protein Overview: gi|222632751, gi...

General Information:
Name(s) found: gi|49328117 [NCBI NR]
gi|222632751 [NCBI NR]
gi|115465773 [NCBI NR]
gi|113580037 [NCBI NR]
Description(s) found:
Found 6 descriptions.
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  • gi|49328117|gb|AAT58815.1| putative ubiquitin [Oryza sativa Japonica Group] [NCBI NR]
  • gi|222632751|gb|EEE64883.1| hypothetical protein OsJ_19742 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115465773|ref|NP_001056486.1| Os05g0590100 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113580037|dbj|BAF18400.1| Os05g0590100 [Oryza sativa Japonica Group] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 586 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTAAGGAT LCAAREEQEL LATRLNVNGI RPPHCAAESI LIYLTAPGLS MMPMRVMASD  60
   61 SIASVKLRVQ TSKGFVVRKQ KLVFDGRELA RNDSRIMDYG VSHGNVLHLV IRISDLRLIT 120
  121 VQTVHGNKFR FRVEPGRTVG YVKQQIAKNS THDDDHHSLV LQGEVLDDAH LIHDVCRTDG 180
  181 AVIHLLVHRS AKLAARPVDR DFEVSIVARN RNAAADAAQP TLHLQRDFAI EPVIVNPKAA 240
  241 LPPVIENLVG AVLAGMEKGN APIMSSEGTG GAYFMQDASG QEHVAVFKPV DEEPMAANNP 300
  301 RGLPPSPTGE GLKKGTRVGE GAIREVAAYI LDHPPGGRRS FAGHHGSATV GFAGVAPTAL 360
  361 VRCMHRSFKQ PAASEQGPPL FKVGSLQAFV KNSGSCEDMG PRAFPVHEVH KICVLDIRLA 420
  421 NADRHAGNIL TCRDEQGHGL TLVPIDHGYC LPESFEDCTF EWLYWPQCRE PFSEETVEYI 480
  481 RSLDAEEDIA ILRFHGWEMP AKCERVLRVT TMLLKKGVDS GLAAFDMGSI LCRETLTKES 540
  541 VIEEIIREVE DDVGDEAAFL QSVSQSMDRR LGELSKKKKS NVSIQD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..317] PSI-BLAST 17.154902 Structure of the DNA repair protein hHR23a
    2 View Details [318..437] deduced N/A No confident structure predictions are available.
    3 View Details [438..586] MSA 6.062979 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0934358341245259 bayes_pls_golite062009
  • protein binding
    		•  0.03789551947602 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.54

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle