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Protein Overview: SR45A_ARATH

General Information:
Name(s) found: SR45A_ARATH [Swiss-Prot]
Description(s) found:
Found 10 descriptions.
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  • Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana GN=SR45A PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 382 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA splicing [NAS]
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKREIHFTP VGRQVQRVLE YPLRLENRSP MSYSRRSRYS PSLSPYDKRR GRSVSRSLSR  60
   61 SPTRSVSSDA ENPGNSLYVT GLSHRVTERD LEDHFAKEGK VTDVHLVLDP WTRESRGFGF 120
  121 ISMKSVGDAN RCIRSLDHSV LQGRVITVEK ARRRRGRTPT PGKYLGLRTA RGRHKSPSYS 180
  181 PRRSVSCSRS RSRSYSSDRG RSYSPSYGRR GRSSSYSPFY RRRRFYSPSR SPSPDDRYNR 240
  241 RRDRSYSPYY RRRDRSRSYS RNCRARDRSP YYMRRYRSRS RSYSPRYRAR DRSCSPYYRG 300
  301 RDRSYSPHYQ GRDRSYSPES RYYRRHRSVS GSVSPGGRSM SRSISPRKGR KESRSKSRRH 360
  361 DRQSSMCHSR SARSSTSRSV SP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..176] PSI-BLAST 31.522879 Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI)
    2 View Details [177..276] deduced N/A No confident structure predictions are available.
    3 View Details [277..382] MSA 3.369996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle