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Protein Overview: PPD5_ARATH

General Information:
Name(s) found: PPD5_ARATH [Swiss-Prot]
Description(s) found:
Found 10 descriptions.
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  • PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis thaliana GN=PPD5 PE=1 SV=3 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 297 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    thylakoid lumen [IDA]
    chloroplast thylakoid lumen [ISS]
    chloroplast thylakoid membrane [IDA]
    thylakoid [IDA]
    Biological Process: photosynthesis [IEA]
    Molecular Function: calcium ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLCPSLPS PNSRLFRCRS SNISSKYHGA SKELMIARSG VSTRSISSEK GLSRRDLVLI  60
   61 GLSSPLSMFL PLSSPVTHAE EDVKMSGEEL KMGTMVDDIN AYSYAYPLDY PSEKLVFKWV 120
  121 ESRKPERYSS AAPLSPDARL RIVSERVDLT DNLVISISIG PPNSRLTSKE KKTWSAKEVA 180
  181 DSVLSDKSAL RVTSSQRLEE SSVLDAHASD IDGEPYWYYE YLVRKSPTKI AEASKLYRHY 240
  241 ISSTAERDGY LYTINASTLG KQWDKMGPVL ERAVGSFRLL PPTDSYVPPY KDPWRFW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..76] MSA 1.050996 View MSA. No confident structure predictions are available.
    2 View Details [77..297] PSI-BLAST 53.0 Crystal Structure of PsbP Protein in the Oxygen-Evolving Complex of Photosystem II from Higher Plants


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.75

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle