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Protein Overview: COPD_ARATH

General Information:
Name(s) found: COPD_ARATH [Swiss-Prot]
Description(s) found:
Found 13 descriptions.
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  • Coatomer subunit delta OS=Arabidopsis thaliana GN=At5g05010 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 527 amino acids

    Gene Ontology:
    Cellular Component: membrane [IDA]
    Biological Process: vesicle-mediated transport [IEA]
    intracellular protein transport [IEA]
    transport [IEA]
    Molecular Function: protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVLAAAIVV KSGKVIVSRH YVDMSRIRIE GLLAAFPKLV GMGKQHTYIE TENVRYVYQP  60
   61 IEALFLLLVT TKQSNILEDL ATLTLLSKLV PEYSMSLDEE GISRASFELI FAFDEVISLG 120
  121 HKESVTVAQV KQYCEMESHE EKLHKLVMQS KINDTKDVMK RKANEIDKSK IEKNKPGGFS 180
  181 SMGSMGSGRL ESGFNELSIS SGGGGGYGSG SGFGMISDVD PINTKPKDRS RSSVTAPPKS 240
  241 SGMKLGKSGK NQLMESLKAE GEDVIEDVKP TGQSKAAAPP PTDPFTLTVE EKLNVALRRD 300
  301 GGLSSFDMQG TLSLQILNQE DGFVQVQIAT GENPEILFKT HPNINRDMFN NENILGLKRP 360
  361 DQPFPTGQGG DGVGLLRWRM QRADESMVPL TINCWPSVSG NETYVSLEYE ASSMFDLTNV 420
  421 IISVPLPALR EAPSVRQCDG EWRYDPRNSV LEWSILLIDN SNRSGSMEFV VPPVDSSVFF 480
  481 PISVQFAATS TYSGLKVTGM IPLRGGGGAT PRFVQRTQLI AQNYQVI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..328] PSI-BLAST 70.522879 MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), COMPLEXED WITH NON-CANONICAL INTERNALIZATION PEPTIDE VEDYEQGLSG
    2 View Details [329..527] PSI-BLAST 58.30103 Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • clathrin binding
    		•  4.44604247436673 bayes_pls_golite062009
  • transporter activity
    		•  1.6020979054057 bayes_pls_golite062009
  • protein transporter activity
    		•  1.50978938003272 bayes_pls_golite062009
  • binding
    		•  1.47935906574431 bayes_pls_golite062009
  • protein binding
    		•  1.10098179099023 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.890040378421594 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle