| Protein: | COPD_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 527 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COPD_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
382.0 | [0..1] | [527..1] |
|
Region A: Residues: [1-328] |
1 11 21 31 41 51
| | | | | |
1 MVVLAAAIVV KSGKVIVSRH YVDMSRIRIE GLLAAFPKLV GMGKQHTYIE TENVRYVYQP 60
61 IEALFLLLVT TKQSNILEDL ATLTLLSKLV PEYSMSLDEE GISRASFELI FAFDEVISLG 120
121 HKESVTVAQV KQYCEMESHE EKLHKLVMQS KINDTKDVMK RKANEIDKSK IEKNKPGGFS 180
181 SMGSMGSGRL ESGFNELSIS SGGGGGYGSG SGFGMISDVD PINTKPKDRS RSSVTAPPKS 240
241 SGMKLGKSGK NQLMESLKAE GEDVIEDVKP TGQSKAAAPP PTDPFTLTVE EKLNVALRRD 300
301 GGLSSFDMQG TLSLQILNQE DGFVQVQI
|
| Detection Method: |  |
| Confidence: | 70.522879 |
| Match: | 2bp5M |
| Description: | MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), COMPLEXED WITH NON-CANONICAL INTERNALIZATION PEPTIDE VEDYEQGLSG |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [329-527] |
1 11 21 31 41 51
| | | | | |
1 ATGENPEILF KTHPNINRDM FNNENILGLK RPDQPFPTGQ GGDGVGLLRW RMQRADESMV 60
61 PLTINCWPSV SGNETYVSLE YEASSMFDLT NVIISVPLPA LREAPSVRQC DGEWRYDPRN 120
121 SVLEWSILLI DNSNRSGSME FVVPPVDSSV FFPISVQFAA TSTYSGLKVT GMIPLRGGGG 180
181 ATPRFVQRTQ LIAQNYQVI
|
| Detection Method: | |
| Confidence: | 58.30103 |
| Match: | 1bxxA |
| Description: | Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| clathrin binding | 4.44604247436673 | bayes_pls_golite062009 |
| transporter activity | 1.6020979054057 | bayes_pls_golite062009 |
| protein transporter activity | 1.50978938003272 | bayes_pls_golite062009 |
| binding | 1.47935906574431 | bayes_pls_golite062009 |
| protein binding | 1.10098179099023 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.890040378421594 | bayes_pls_golite062009 |
