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Protein Overview: nurf-1

General Information:
Name(s) found: nurf-1 / CE37638 [WormBase]
Description(s) found:
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  • WBGene00009180 locus:nurf-1 Nucleosome-remodeling factor subunit NURF301-like status:Confirmed UniProt:Q6BER5 protein_id:CAH60782.1 [WormBase]
  • gi|71987502|ref|NP_001022121.1| NURF (nucleosome remodeling factor) complex homolog family member (nurf-1) [Caenorhabditis elegans] [NCBI NR]
  • gi|54110963|emb|CAH60782.1| C. elegans protein F26H11.2g, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • Hypothetical protein F26H11.2g [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • CE37638 WBGene00009180 locus:nurf-1 status:Confirmed TR:Q5WRM3 protein_id:CAH60782.1 [wormpep150.fasta]
  • 37638 WBGene00009180 locus:nurf-1 status:Confirmed TR:Q5WRM3 protein_id:CAH60782.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • CE37638 WBGene00009180 status:Confirmed TR:Q5WRM3 protein_id:CAH60782.1 [WormBase_C-elegans_na_01-20-2005_combined_reversed.fasta]
  • CE37638 WBGene00009180 locus:nurf-1 status:Confirmed UniProt:Q6BER5 protein_id:CAH60782.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE37638 WBGene00009180 locus:nurf-1 status:Confirmed UniProt:Q6BER5 protein_id:CAH60782.1| [wormORF-contam.fasta]
  • F26H11.2g [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE37638 WBGene00009180 locus:nurf-1 status:Confirmed SW:Q6BER5 protein_id:CAH60782.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE37638 WBGene00009180 locus:nurf-1 status:Confirmed UniProt:Q6BER5 protein_id:CAH60782.1 Nucleosome-remodeling factor subunit NURF301-like [wormpep246-ecoli-contam.fasta]
  • Isoform of Q6BER5, Isoform g of Nucleosome-remodeling factor subunit NURF301-like OS=Caenorhabditis elegans GN=nurf-1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 413 amino acids

    Gene Ontology:
    Cellular Component: proteinaceous extracellular matrix [IEALink to PubMed article]
    Biological Process: positive regulation of growth rate [IMPLink to PubMed article]
    cell adhesion [IEALink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    blood coagulation [IEALink to PubMed article]
    Molecular Function: zinc ion binding [IEALink to PubMed article]
    protein binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLRTVILPT ATYTAPSQYC PSTVLSNLTL SCPYQDQEAD ASLEISDFAE VLPKFESAEQ  60
   61 DWNSFGYLLN EQPGTSSDKT TTPIKKITVF QKPVEPPASH VAFHTPGSAT PHDINLSIEH 120
  121 CTCQKIFDAS KLYIQCELCA RWYHGDCVGV AEQTILGLEH WSCEECIEEQ ERVKDQPALY 180
  181 CVCQKPYDDT KFYVGCDSCQ GWFHPECVGT TRAEAEQAAD YNCPACTREA EGYESEASDV 240
  241 SGSSRVSVQL TRADYTHVFE LLELLLEHRM STPFRNPVDL NEFPDYEKFI KKPMDLSTIT 300
  301 KKVERTEYLY LSQFVNDVNQ MFENAKTYNP KGNAVFKCAE TMQEVFDKKL IDVREQMTAR 360
  361 QQMLLLATAQ QQDPMSSIRK RVQSESQRTV DSLDIDSDQL LPLDANLMRL YDF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..98] deduced N/A No confident structure predictions are available.
    2 View Details [99..172] PSI-BLAST 10.522879 Solution structure of PHD domain in PHF8
    3 View Details [173..413] PSI-BLAST 26.045757 No description for 2f6jA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.24093737575291 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.76

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle