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Protein Overview: SWI3B_ARATH

General Information:
Name(s) found: SWI3B_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75327834|sp|Q84JG2.1|SWI3B_ARATH RecName: Full=SWI/SNF complex subunit SWI3B; Short=AtSWI3B; AltName: Full=Transcription regulatory protein SWI3B [NCBI NR]
  • gi|30685774|ref|NP_180919.2| ATSWI3B (SWITCH SUBUNIT 3); DNA binding [Arabidopsis thaliana] [NCBI NR]
  • gi|28827566|gb|AAO50627.1| putative SWI/SNF complex subunit SW13 [Arabidopsis thaliana] [NCBI NR]
  • gi|28393376|gb|AAO42112.1| putative SWI/SNF complex subunit SW13 [Arabidopsis thaliana] [NCBI NR]
  • SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana GN=SWI3B PE=1 SV=1 [Swiss-Prot]
  • putative SWI/SNF complex subunit SW13 [Arabidopsis thaliana]gi|28393376|gb|AAO42112.1| putative SWI/SNF complex subunit SW13 [Arabidopsis thaliana]gi|30685774|ref|NP_180919.2| SWIRM domain-containing protein / DNA-binding family protein [Arabidopsis tha [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 SWIRM domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: CHB2, ATSWI3B | ATSWI3B (Arabidopsis thaliana switching protein 3B); DNA binding | chr2:14236099-14238225 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative SWI/SNF complex subunit SW13 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATSWI3B; DNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATSWI3B, CHB2, SWI3B | switch subunit 3 | chr2:14229023-14231149 FORWARD LENGTH=469 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 469 amino acids

    Gene Ontology:
    Cellular Component: SWI/SNF complex [ISS]
    nucleus [IDA]
    Biological Process: chromatin remodeling [ISS]
    Molecular Function: DNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMKAPDPGG SGEILPSTPS LSETTSGGAA AASKSAQLPS SSSDIDNIHV PSYSSWFSWT  60
   61 DINDCEVRSL PEFFDSRSSS KNPKFYLYLR NSIIKQYRDD HPRKISFTDV RRTLVSDVVS 120
  121 IRRVFDFLDS WGLINYNSSA SAKPLKWEEK EAGKSAGDAA SEPATTVKET AKRNCNGCKA 180
  181 ICSIACFACD KYDLTLCARC YVRSNYRVGI NSSEFKRVEI SEESKPEWSD KEILLLLEAV 240
  241 MHYGDDWKKV ASHVIGRTEK DCVSQFVKLP FGEQFVKESD SEDGLEMFDQ IKDSDIPESE 300
  301 GIDKDGSSPN KRIKLTPLAD ASNPIMAQAA FLSALAGTNV AEAAARAAVR ALSDVDYEAD 360
  361 KNASRDPNRQ DANAASSGET TRNESERAWA DAKSLIEKEE HEVEGAIKET VEVEMKKIRD 420
  421 RIVHFEKLDL EMERSRKQLE EVRNLLFVDQ LNIFFHTRKA RKTEDRIEC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..469] PSI-BLAST 42.0 No description for 2iw5A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle