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Protein Overview: gi|30681747, gi|...

General Information:
Name(s) found: gi|91805767 [NCBI NR]
gi|30681747 [NCBI NR]
gi|12053869 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|91805767|gb|ABE65612.1| DNA polymerase lambda [Arabidopsis thaliana] [NCBI NR]
  • gi|30681747|ref|NP_172522.2| DNA polymerase lambda (POLL) [Arabidopsis thaliana] [NCBI NR]
  • gi|12053869|emb|CAC21394.1| DNA polymerase lambda [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 529 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: DNA repair [IEA]
    DNA replication [IEA]
    Molecular Function: DNA binding [IEA]
    nucleotidyltransferase activity [IEA]
    DNA-directed DNA polymerase activity [IEA][ISS]
    catalytic activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKRGRNRS PSPDPEGMFA GMVVFMVEIG VQRRRLQIWK QKLVQMGAVI EEDRVTKKVT  60
   61 HVLAMNLEAL LHKFGKERLS HFTARLMLYQ WLEDSLTSGE KANEDLYVLK IDSEEVDKPK 120
  121 KSLPAISGSE DQSSPQKRTR YSPDAGDFKG VESHSNTQGS PDSPTSCSVP STSASPGEGI 180
  181 AETPTSPQSE STSVYKPPDL NRNITEIFGK LINIYRALGE DRRSFSYYKA IPVIEKFPTR 240
  241 IESVDQLKHL PGIGKAMRDH IQEIVTTGKL SKLEHFETDE KVRTISLFGE VWGVGPATAL 300
  301 KLYEKGHRTL EDLKNEDSLT HAQKLGLKYF DDIKTRIPRQ EVQEMEQLLQ RVGEETLPGV 360
  361 NIVCGGSYRR GKATCGDLDI VVTHPDGQSH KGFLTKFVKR LKEMNFLRED LIFSTHSEEG 420
  421 TDSGVDTYFG LCTYPGQELR RRIDFKVYPR DIYSFGLIAW TGNDVLNRRL RLLAESKGYR 480
  481 LDDTGLFPAT HSSSGNRGAR GTASLKLSTE KQVFDFLGFP WLEPHERNL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..187] PSI-BLAST 6.09691 No description for 2nteA was found.
    2 View Details [188..529] PSI-BLAST 102.0 Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • DNA-directed DNA polymerase activity
    		•  5.14301767080098 bayes_pls_golite062009
  • DNA polymerase activity
    		•  5.09523809908438 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  2.75404349131504 bayes_pls_golite062009
  • catalytic activity
    		•  0.60409960326459 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.62

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle