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Protein Overview: CCSDS_ARATH

General Information:
Name(s) found: CCSDS_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|30683981|ref|NP_172928.2| SDS (SOLO DANCERS); cyclin-dependent protein kinase [Arabidopsis thaliana] [NCBI NR]
  • gi|20302467|emb|CAD30003.1| cyclin-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|147637577|sp|Q1PFW3.2|CCSDS_ARATH RecName: Full=Cyclin-SDS; AltName: Full=Protein SOLO DANCERS [NCBI NR]
  • Cyclin-SDS OS=Arabidopsis thaliana GN=SDS PE=1 SV=2 [Swiss-Prot]
  • cyclin-like protein [Arabidopsis thaliana]gi|30683981|ref|NP_172928.2| cyclin, putative (SDS) [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Cyclin [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: SDS | SDS (SOLO DANCERS); cyclin-dependent protein kinase | chr1:5079669-5082418 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • cyclin-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • SDS (SOLO DANCERS); cyclin-dependent protein kinase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SDS | Cyclin family protein | chr1:5079674-5082423 REVERSE LENGTH=578 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 578 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    chloroplast [IEA]
    Biological Process: chiasma assembly [IMP]
    double-strand break repair via homologous recombination [IMP]
    regulation of cell cycle [ISS]
    Molecular Function: cyclin-dependent protein kinase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEIAMRNSK RKPEPTPFAG KKLRSTRLRR KRAQISPVLV QSPLWSKQIG VSAASVDSCS  60
   61 DLLADDNVSC GSSRVEKSSN PKKTLIEEVE VSKPGYNVKE TIGDSKFRRI TRSYSKLHKE 120
  121 KEGDEIEVSE SSCVDSNSGA GLRRLNVKGN KINDNDEISF SRSDVTFAGH VSNSRSLNFE 180
  181 SENKESDVVS VISGVEYCSK FGSVTGGADN EEIEISKPSS FVEADSSLGS AKELKPELEI 240
  241 VGCVSDLACS EKFSEEVSDS LDDESSEQRS EIYSQYSDFD YSDYTPSIFF DSGSEFSEKS 300
  301 SSDSPISHSR SLYLQFKEQF CRSTIPNDFG SSCEEEIHSE LLRFDDEEVE ESYLRLRERE 360
  361 RSHAYMRDCA KAYCSRMDNT GLIPRLRSIM VQWIVKQCSD MGLQQETLFL GVGLLDRFLS 420
  421 KGSFKSERTL ILVGIASLTL ATRIEENQPY NSIRKRNFTI QNLRYSRHEV VAMEWLVQEV 480
  481 LNFKCFTPTI FNFLWFYLKA ARANPEVERK AKSLAVTSLS DQTQLCFWPS TVAAALVVLA 540
  541 CIEHNKISAY QRVIKVHVRT TDNELPECVK SLDWLLGQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..134] deduced N/A No confident structure predictions are available.
    2 View Details [135..342] deduced N/A No confident structure predictions are available.
    3 View Details [343..578] PSI-BLAST 61.0 No description for 2jgzB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.35

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle