YRC Public Data Repository - Protein Structure Prediction

Protein:	CCSDS_ARATH
Organism:	Arabidopsis thaliana
Length:	578 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCSDS_ARATH.

Description	E-value	Query Range	Subject Range
gi\|8778235 - gi\|8778235\|gb\|AAF79244.1\|AC006917_29 F10B6.15 [Arabidopsis thaliana]	420.0	[0..6]	[570..1]
CCN1_ANTMA - G2/mitotic-specific cyclin-1 OS=Antirrhinum majus PE=2 SV=1	289.0	[0..161]	[575..8]
CG21_EMENI - G2/mitotic-specific cyclin-B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL... CG21_EMENI - G2/mitotic-specific cyclin-B OS=Emericella nidulans GN=nimE PE=2 SV=1	288.0	[0..120]	[578..1]
gi\|7438501, gi\|4... - pir\|\|T10526 cyclin B1c-ll - yellow lupine, gi\|4884728\|gb\|AAD31790.1\|AF126107_1 mitotic cyclin B1-3 [...	287.0	[0..176]	[577..26]
gi\|9502284 - gi\|9502284\|gb\|AAF88072.1\| cyclin [Cicer arietinum]	287.0	[0..161]	[576..8]
gi\|114599953 - gi\|114599953\|ref\|XP_517728.2\| PREDICTED: cyclin B1 [Pan troglodytes]	282.0	[0..116]	[577..52]
gi\|1835260 - gi\|1835260\|emb\|CAA99990.1\| mitotic cyclin [Sesbania rostrata]	281.0	[0..176]	[577..24]
gi\|51762951 - gi\|51762951\|ref\|XP_485921.1\| PREDICTED: similar to cyclin B1 isoform 1 [Mus musculus]	280.0	[0..203]	[577..9]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEIAMRNSK RKPEPTPFAG KKLRSTRLRR KRAQISPVLV QSPLWSKQIG VSAASVDSCS  60
   61 DLLADDNVSC GSSRVEKSSN PKKTLIEEVE VSKPGYNVKE TIGDSKFRRI TRSYSKLHKE 120
  121 KEGDEIEVSE SSCV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [135-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSNSGAGLRR LNVKGNKIND NDEISFSRSD VTFAGHVSNS RSLNFESENK ESDVVSVISG  60
   61 VEYCSKFGSV TGGADNEEIE ISKPSSFVEA DSSLGSAKEL KPELEIVGCV SDLACSEKFS 120
  121 EEVSDSLDDE SSEQRSEIYS QYSDFDYSDY TPSIFFDSGS EFSEKSSSDS PISHSRSLYL 180
  181 QFKEQFCRST IPNDFGSSCE EEIHSELL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [343-578]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RFDDEEVEES YLRLRERERS HAYMRDCAKA YCSRMDNTGL IPRLRSIMVQ WIVKQCSDMG  60
   61 LQQETLFLGV GLLDRFLSKG SFKSERTLIL VGIASLTLAT RIEENQPYNS IRKRNFTIQN 120
  121 LRYSRHEVVA MEWLVQEVLN FKCFTPTIFN FLWFYLKAAR ANPEVERKAK SLAVTSLSDQ 180
  181 TQLCFWPSTV AAALVVLACI EHNKISAYQR VIKVHVRTTD NELPECVKSL DWLLGQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.0
Match:	2jgzB
Description:	No description for 2jgzB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits