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Protein Overview: gi|27754564, gi|...

General Information:
Name(s) found: gi|28393871 [NCBI NR]
gi|27754564 [NCBI NR]
gi|18416732 [NCBI NR]
Description(s) found:
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  • gi|28393871|gb|AAO42343.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|27754564|gb|AAO22729.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18416732|ref|NP_568256.1| conserved oligomeric Golgi complex component-related / COG complex component-related [Arabidopsis thaliana] [NCBI NR]
  • unknown protein [Arabidopsis thaliana]gi|27754564|gb|AAO22729.1| unknown protein [Arabidopsis thaliana]gi|18416732|ref|NP_568256.1| conserved oligomeric Golgi complex component-related / COG complex component-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Conserved oligomeric Golgi complex component-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | conserved oligomeric Golgi complex component-related / COG complex component-related | chr5:3868810-3872147 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | conserved oligomeric Golgi complex component-related / COG complex component-related | chr5:3868809-3872146 REVERSE LENGTH=569 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Conserved oligomeric Golgi complex component-related protein OS=Arabidopsis thaliana GN=At5g11980 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 569 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMEVGEMSQ PEATASLLSL ASATQQPYVS ELLSFTLDRL HKEPELLRVD AERIQRQMQE  60
   61 VAVGNYRAFI TAADALLAIR QEVSSIDKHL ESLIGEVPKL TSGCTEFIDS AENILEKRKM 120
  121 NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV 180
  181 RQTTQSLLSQ LLQKLRSNIQ LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED 240
  241 LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL 300
  301 KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA 360
  361 VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL MEHPPLAVFI NGVSSALNEL 420
  421 RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVVFPHCA 480
  481 TCFGRCYPGG ATIVMDAKSA YEGLGRILAA SSSQEPSNKS PKVISTDTKD ASENGVASQP 540
  541 EEKQAENPNA KEEDNSPIPL QTPEITPES

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..109] MSA 6.239995 View MSA. Confident ab initio structure predictions are available.
    2 View Details [110..371] PSI-BLAST 14.39794 Crystal Structure of the Exo84p C-terminal Domains
    3 View Details [372..569] MSA 1.113943 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle