| General Information: |
|
| Name(s) found: |
gi|48926660
[NCBI NR]
|
| Description(s) found:
SHOW ONLY BEST |
|
| Organism: | Oryza sativa Japonica Group |
| Length: | 1943 amino acids |
Gene Ontology: |
|
| Cellular Component: | NONE FOUND |
| Biological Process: | NONE FOUND |
| Molecular Function: | NONE FOUND |
| Sequence: |
|
| Sequence: [PDR BLAST] [ProtParam] |
1 11 21 31 41 51
| | | | | |
1 MDEVGGRWTF SRANEGYTSC GPMAGSVTRR GLDMTGFVLE LRGMCVVLGY PHGVDYQARP 60
61 LPEQEGEDAE PHAGWEVTAV ILSGSPERTS LAVTAGGDSF PAACQNAALL AIGTLHQRYP 120
121 DELQHSPYRY HPRRGGARDF ATFRDASSED DATVVHLARM VEAYDAARID FHQMVRRGMV 180
181 ENNMKILELR QENLQLKKDL DALEAQLHQL KIAQGEDSRP KRRRVCRSQK ITARKSTSRP 240
241 ELVRQSLAWT CFVETPRAEP APVVPQEGEA SGVGSSEAPS RFAGSVWGFQ MVTTRRNVNT 300
301 GEGNQPEGSN PNPQGNPPPP PPPDTNAILT QILAQQANMM NAFLHHLQNP PQQNAPPPPP 360
361 QHSKLAEFLR IRPPTFSSSN NPVDALDWLH AVGKKLDTVQ CSDEEKVIFA AHQLQGPASL 420
421 WWDHFQATQP EGQPITWARF TAAFRRTHVP AGVVALKKRE FRELKQGNRS VMEYLHEFNN 480
481 LARYAPEDVR EDEEKQEKFL AGMDPELSVR LVSGDYPDFQ RLVDKSIRLE AKHKELESHK 540
541 RRLANFRNQQ GANQRVRYTN PYPGGSSSQQ QQQQQQPRPA PRPQFVVRVP QQQQQQNQQG 600
601 TRAPRPPTPA GQPVQGRRDA SGPQRLCFNC FEPGHFADKC PKPRRQKGQA PPRSNNGGKD 660
661 VIRGRVNHVT AEDVLTTPDV IVGTFLVHSI PATILFDSGA SHSFISVPFV GKNQLGVERL 720
721 RNPLLITTPG GVMTAKYYSP AVPIEIQGIP FPSDLILLDT KNLDVILGMN WLAQFQGVVD 780
781 CARRTVTLYR GPEQPVVFFA PPTSVRSSEL HQIELSEIPI VREFGDVFPE ELPGMPPKRE 840
841 IEFRIDLAPG TTPLYKRPYR MAANELAEVK KQLEELKEKG YIRPSTSPWG APVIFVEKKD 900
901 KTKRMCVDYR ALNEVTIKNK YPLPRIDDLF DQLKGATVFS KIDLRSGYHQ LRIREEDIPK 960
961 TAFTTRYGLY EFTVMSFGLT NAPAFFMNLM NKVFMEYLDK FVVVFIDDIL IYSQSEEDHQ1020
1021 HHLRQVLGKL REHQLYAKLS KCEFWLSEVK FLGHVISAKG VAVDPETVTA VTEWKQPKTV1080
1081 TQVRSFLGLA GYYRRFIENF SKIARPMTQL LKKEEKFVWS PQCEKAFQTL KEKLVSSPVL1140
1141 ILPDTRKDFM VYCDASRQGL GCVLMQDGHV VAYASRQLRP HEGNYPTHDL ELAAVVHALK1200
1201 IWRHYLIGNR CEIYTDHKSL KYIFTQSDLN LRQRRWLELI KDYDVGIHYH PGKANVVADA1260
1261 LSRKSHCNTL NVRGIPPELN QQMEALNLNI VGRGFLAALE AKPTLLDQIR EAQKNDPDMH1320
1321 GLLKNMKQGK AAGFTEDEHG TLWNGKRVCV PDSRELKQLI LQEAHESPYS IHPGSTKMYL1380
1381 DLKEKYWWVS MKREIAEFVA LCDVCQRVKA EHQRPAGLLQ PLQVPEWKWD EIGMDFITGL1440
1441 PKTQGGYDSI WVIVDRLTKV ARFIPVKTTY GGNKLAELYF ARIVSLHGIP KKIVSDRGSQ1500
1501 FTSHFWKKLQ EELGTRLNFS TAYHPQTDGQ TERLNQILED MLRACVLDFG KTWDKSLPYA1560
1561 EFSYNNSYQA SIQMAPYEAL YGRKCRTPLL WDQVGESQVF GTDILREAEA KVRIIRDNLK1620
1621 VAQSRQKSYA DNRRRDLEFA VDDFVYLRVT PLRGVHRFRT KGKLAPRYVG PFRIVARRGE1680
1681 VAYQLELPAS LGNVHDVFHV SQLKKCLRVP SEQANSEQIE VREDLTYVEK PVKILDTMDG1740
1741 LLGSLLGFSE ADVGALQIAA EGEDPLGDEG CLHGAEIQHP LDHHPEVLRV PVLFAPLVGP1800
1801 HDVLGPGVLP GAPGAPLERR DPATKVVAEH HGPCEPLGSQ ARQAVKNGVV AVSQIYRRPP1860
1861 AGGLRRGLAR KSEARFVDEG GVEPVALPVV PLFAEDAGNV AVQHLPPRLE VAATDYRRRR1920
1921 HRLNGEEPPE QPERWPTSLS RWG |
NOT SHOWING SINGLE HITS. [ Show Single Hits ]
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Domains predicted:
| # | Region(s) | Method | Confidence | Match Description | |
| 1 | View Details | [1..181] |  |
N/A | No confident structure predictions are available. |
| 2 | View Details | [182..484] | |
41.522879 | HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA); HIV-1 capsid protein |
| 3 | View Details | [485..587] | |
30.0 | No description for 3dikA was found. |
| 4 | View Details | [588..727] | |
5.30103 | HIV nucleocapsid |
| 5 | View Details | [728..830] | |
21.045757 | HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor |
| 6 | View Details | [831..1345] | |
148.0 | No description for 3drsA was found. |
| 7 | View Details | [1346..1680] | |
66.221849 | N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain |
| 8 | View Details | [1681..1943] | |
N/A | No confident structure predictions are available. |
| Protein predicted to be: | GLOBULAR (No transmembrane regions or signal peptide) |
| Confidence of classification: | 0.95 |
Source: Reynolds et al. (2008)