| Protein: | gi|48926660 |
| Organism: | Oryza sativa Japonica Group |
| Length: | 1943 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
No multiple sequence alignment data found for gi|48926660.
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Region A: Residues: [1-181] |
1 11 21 31 41 51
| | | | | |
1 MDEVGGRWTF SRANEGYTSC GPMAGSVTRR GLDMTGFVLE LRGMCVVLGY PHGVDYQARP 60
61 LPEQEGEDAE PHAGWEVTAV ILSGSPERTS LAVTAGGDSF PAACQNAALL AIGTLHQRYP 120
121 DELQHSPYRY HPRRGGARDF ATFRDASSED DATVVHLARM VEAYDAARID FHQMVRRGMV 180
181 E
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
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Region A: Residues: [182-484] |
1 11 21 31 41 51
| | | | | |
1 NNMKILELRQ ENLQLKKDLD ALEAQLHQLK IAQGEDSRPK RRRVCRSQKI TARKSTSRPE 60
61 LVRQSLAWTC FVETPRAEPA PVVPQEGEAS GVGSSEAPSR FAGSVWGFQM VTTRRNVNTG 120
121 EGNQPEGSNP NPQGNPPPPP PPDTNAILTQ ILAQQANMMN AFLHHLQNPP QQNAPPPPPQ 180
181 HSKLAEFLRI RPPTFSSSNN PVDALDWLHA VGKKLDTVQC SDEEKVIFAA HQLQGPASLW 240
241 WDHFQATQPE GQPITWARFT AAFRRTHVPA GVVALKKREF RELKQGNRSV MEYLHEFNNL 300
301 ARY
|
| Detection Method: | |
| Confidence: | 41.522879 |
| Match: | 1l6nA |
| Description: | HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA); HIV-1 capsid protein |
Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [485-587] |
1 11 21 31 41 51
| | | | | |
1 APEDVREDEE KQEKFLAGMD PELSVRLVSG DYPDFQRLVD KSIRLEAKHK ELESHKRRLA 60
61 NFRNQQGANQ RVRYTNPYPG GSSSQQQQQQ QQPRPAPRPQ FVV
|
| Detection Method: | |
| Confidence: | 30.0 |
| Match: | 3dikA |
| Description: | No description for 3dikA was found. |
|
Region A: Residues: [588-727] |
1 11 21 31 41 51
| | | | | |
1 RVPQQQQQQN QQGTRAPRPP TPAGQPVQGR RDASGPQRLC FNCFEPGHFA DKCPKPRRQK 60
61 GQAPPRSNNG GKDVIRGRVN HVTAEDVLTT PDVIVGTFLV HSIPATILFD SGASHSFISV 120
121 PFVGKNQLGV ERLRNPLLIT
|
| Detection Method: | |
| Confidence: | 5.30103 |
| Match: | 1a1tA |
| Description: | HIV nucleocapsid |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [728-830] |
1 11 21 31 41 51
| | | | | |
1 TPGGVMTAKY YSPAVPIEIQ GIPFPSDLIL LDTKNLDVIL GMNWLAQFQG VVDCARRTVT 60
61 LYRGPEQPVV FFAPPTSVRS SELHQIELSE IPIVREFGDV FPE
|
| Detection Method: | |
| Confidence: | 21.045757 |
| Match: | 1w5vA |
| Description: | HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [831-1345] |
1 11 21 31 41 51
| | | | | |
1 ELPGMPPKRE IEFRIDLAPG TTPLYKRPYR MAANELAEVK KQLEELKEKG YIRPSTSPWG 60
61 APVIFVEKKD KTKRMCVDYR ALNEVTIKNK YPLPRIDDLF DQLKGATVFS KIDLRSGYHQ 120
121 LRIREEDIPK TAFTTRYGLY EFTVMSFGLT NAPAFFMNLM NKVFMEYLDK FVVVFIDDIL 180
181 IYSQSEEDHQ HHLRQVLGKL REHQLYAKLS KCEFWLSEVK FLGHVISAKG VAVDPETVTA 240
241 VTEWKQPKTV TQVRSFLGLA GYYRRFIENF SKIARPMTQL LKKEEKFVWS PQCEKAFQTL 300
301 KEKLVSSPVL ILPDTRKDFM VYCDASRQGL GCVLMQDGHV VAYASRQLRP HEGNYPTHDL 360
361 ELAAVVHALK IWRHYLIGNR CEIYTDHKSL KYIFTQSDLN LRQRRWLELI KDYDVGIHYH 420
421 PGKANVVADA LSRKSHCNTL NVRGIPPELN QQMEALNLNI VGRGFLAALE AKPTLLDQIR 480
481 EAQKNDPDMH GLLKNMKQGK AAGFTEDEHG TLWNG
|
| Detection Method: | |
| Confidence: | 148.0 |
| Match: | 3drsA |
| Description: | No description for 3drsA was found. |
|
Region A: Residues: [1346-1680] |
1 11 21 31 41 51
| | | | | |
1 KRVCVPDSRE LKQLILQEAH ESPYSIHPGS TKMYLDLKEK YWWVSMKREI AEFVALCDVC 60
61 QRVKAEHQRP AGLLQPLQVP EWKWDEIGMD FITGLPKTQG GYDSIWVIVD RLTKVARFIP 120
121 VKTTYGGNKL AELYFARIVS LHGIPKKIVS DRGSQFTSHF WKKLQEELGT RLNFSTAYHP 180
181 QTDGQTERLN QILEDMLRAC VLDFGKTWDK SLPYAEFSYN NSYQASIQMA PYEALYGRKC 240
241 RTPLLWDQVG ESQVFGTDIL REAEAKVRII RDNLKVAQSR QKSYADNRRR DLEFAVDDFV 300
301 YLRVTPLRGV HRFRTKGKLA PRYVGPFRIV ARRGE
|
| Detection Method: | |
| Confidence: | 66.221849 |
| Match: | 1k6yA |
| Description: | N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain |
Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [1681-1943] |
1 11 21 31 41 51
| | | | | |
1 VAYQLELPAS LGNVHDVFHV SQLKKCLRVP SEQANSEQIE VREDLTYVEK PVKILDTMDG 60
61 LLGSLLGFSE ADVGALQIAA EGEDPLGDEG CLHGAEIQHP LDHHPEVLRV PVLFAPLVGP 120
121 HDVLGPGVLP GAPGAPLERR DPATKVVAEH HGPCEPLGSQ ARQAVKNGVV AVSQIYRRPP 180
181 AGGLRRGLAR KSEARFVDEG GVEPVALPVV PLFAEDAGNV AVQHLPPRLE VAATDYRRRR 240
241 HRLNGEEPPE QPERWPTSLS RWG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
