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Protein Overview: gi|48926660

General Information:
Name(s) found: gi|48926660 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • gi|48926660|gb|AAT47449.1| putative polyprotein [Oryza sativa Japonica Group] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 1943 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEVGGRWTF SRANEGYTSC GPMAGSVTRR GLDMTGFVLE LRGMCVVLGY PHGVDYQARP  60
   61 LPEQEGEDAE PHAGWEVTAV ILSGSPERTS LAVTAGGDSF PAACQNAALL AIGTLHQRYP 120
  121 DELQHSPYRY HPRRGGARDF ATFRDASSED DATVVHLARM VEAYDAARID FHQMVRRGMV 180
  181 ENNMKILELR QENLQLKKDL DALEAQLHQL KIAQGEDSRP KRRRVCRSQK ITARKSTSRP 240
  241 ELVRQSLAWT CFVETPRAEP APVVPQEGEA SGVGSSEAPS RFAGSVWGFQ MVTTRRNVNT 300
  301 GEGNQPEGSN PNPQGNPPPP PPPDTNAILT QILAQQANMM NAFLHHLQNP PQQNAPPPPP 360
  361 QHSKLAEFLR IRPPTFSSSN NPVDALDWLH AVGKKLDTVQ CSDEEKVIFA AHQLQGPASL 420
  421 WWDHFQATQP EGQPITWARF TAAFRRTHVP AGVVALKKRE FRELKQGNRS VMEYLHEFNN 480
  481 LARYAPEDVR EDEEKQEKFL AGMDPELSVR LVSGDYPDFQ RLVDKSIRLE AKHKELESHK 540
  541 RRLANFRNQQ GANQRVRYTN PYPGGSSSQQ QQQQQQPRPA PRPQFVVRVP QQQQQQNQQG 600
  601 TRAPRPPTPA GQPVQGRRDA SGPQRLCFNC FEPGHFADKC PKPRRQKGQA PPRSNNGGKD 660
  661 VIRGRVNHVT AEDVLTTPDV IVGTFLVHSI PATILFDSGA SHSFISVPFV GKNQLGVERL 720
  721 RNPLLITTPG GVMTAKYYSP AVPIEIQGIP FPSDLILLDT KNLDVILGMN WLAQFQGVVD 780
  781 CARRTVTLYR GPEQPVVFFA PPTSVRSSEL HQIELSEIPI VREFGDVFPE ELPGMPPKRE 840
  841 IEFRIDLAPG TTPLYKRPYR MAANELAEVK KQLEELKEKG YIRPSTSPWG APVIFVEKKD 900
  901 KTKRMCVDYR ALNEVTIKNK YPLPRIDDLF DQLKGATVFS KIDLRSGYHQ LRIREEDIPK 960
  961 TAFTTRYGLY EFTVMSFGLT NAPAFFMNLM NKVFMEYLDK FVVVFIDDIL IYSQSEEDHQ1020
 1021 HHLRQVLGKL REHQLYAKLS KCEFWLSEVK FLGHVISAKG VAVDPETVTA VTEWKQPKTV1080
 1081 TQVRSFLGLA GYYRRFIENF SKIARPMTQL LKKEEKFVWS PQCEKAFQTL KEKLVSSPVL1140
 1141 ILPDTRKDFM VYCDASRQGL GCVLMQDGHV VAYASRQLRP HEGNYPTHDL ELAAVVHALK1200
 1201 IWRHYLIGNR CEIYTDHKSL KYIFTQSDLN LRQRRWLELI KDYDVGIHYH PGKANVVADA1260
 1261 LSRKSHCNTL NVRGIPPELN QQMEALNLNI VGRGFLAALE AKPTLLDQIR EAQKNDPDMH1320
 1321 GLLKNMKQGK AAGFTEDEHG TLWNGKRVCV PDSRELKQLI LQEAHESPYS IHPGSTKMYL1380
 1381 DLKEKYWWVS MKREIAEFVA LCDVCQRVKA EHQRPAGLLQ PLQVPEWKWD EIGMDFITGL1440
 1441 PKTQGGYDSI WVIVDRLTKV ARFIPVKTTY GGNKLAELYF ARIVSLHGIP KKIVSDRGSQ1500
 1501 FTSHFWKKLQ EELGTRLNFS TAYHPQTDGQ TERLNQILED MLRACVLDFG KTWDKSLPYA1560
 1561 EFSYNNSYQA SIQMAPYEAL YGRKCRTPLL WDQVGESQVF GTDILREAEA KVRIIRDNLK1620
 1621 VAQSRQKSYA DNRRRDLEFA VDDFVYLRVT PLRGVHRFRT KGKLAPRYVG PFRIVARRGE1680
 1681 VAYQLELPAS LGNVHDVFHV SQLKKCLRVP SEQANSEQIE VREDLTYVEK PVKILDTMDG1740
 1741 LLGSLLGFSE ADVGALQIAA EGEDPLGDEG CLHGAEIQHP LDHHPEVLRV PVLFAPLVGP1800
 1801 HDVLGPGVLP GAPGAPLERR DPATKVVAEH HGPCEPLGSQ ARQAVKNGVV AVSQIYRRPP1860
 1861 AGGLRRGLAR KSEARFVDEG GVEPVALPVV PLFAEDAGNV AVQHLPPRLE VAATDYRRRR1920
 1921 HRLNGEEPPE QPERWPTSLS RWG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..181] deduced N/A No confident structure predictions are available.
    2 View Details [182..484] PSI-BLAST 41.522879 HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA); HIV-1 capsid protein
    3 View Details [485..587] PSI-BLAST 30.0 No description for 3dikA was found.
    4 View Details [588..727] PSI-BLAST 5.30103 HIV nucleocapsid
    5 View Details [728..830] PSI-BLAST 21.045757 HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor
    6 View Details [831..1345] PSI-BLAST 148.0 No description for 3drsA was found.
    7 View Details [1346..1680] PSI-BLAST 66.221849 N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain
    8 View Details [1681..1943] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

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