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Protein Overview: gi|18411740, gi|...

General Information:
Name(s) found: gi|27754215 [NCBI NR]
gi|18411740 [NCBI NR]
Description(s) found:
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  • gi|27754215|gb|AAO22561.1| putative protein transport factor [Arabidopsis thaliana] [NCBI NR]
  • gi|18411740|ref|NP_567217.1| protein transport protein-related [Arabidopsis thaliana] [NCBI NR]
  • putative protein transport factor [Arabidopsis thaliana]gi|18411740|ref|NP_567217.1| protein transport protein-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Protein transport protein-related, related to Sec23 protein (Homo sapiens) gi:1296664:em [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | protein transport protein-related | chr4:776734-779802 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative protein transport factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • protein binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Sec23/Sec24 protein transport family protein | chr4:776734-779802 REVERSE LENGTH=880 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative uncharacterized protein At4g01810 OS=Arabidopsis thaliana GN=At4g01810 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 880 amino acids

    Gene Ontology:
    Cellular Component: COPII vesicle coat [IEA]
    Biological Process: ER to Golgi vesicle-mediated transport [IEA]
    intracellular protein transport [IEA]
    Molecular Function: zinc ion binding [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLPKSSVN YPGTLTPLEP NRPSPQPDRT PVPHSPPVVA SPIPPRFPQP SFRPDQMSSP  60
   61 SMKSPSLLSP ANGIRTGSPI PRLSTPPGPP VFNTPVKPAA VPFRTSPATP QPMAYSSANS 120
  121 SLPVSTPSFY SNGSSVGSQR DLPDVVRMEE PIAADSPYVL FSANKVLKQK KLANVASLGF 180
  181 GAIVSAGREI SPGPQIIQRD PHRCLNCGAY SNPYSSILIG SGQWQCVICE NMNGSKGEYV 240
  241 ASSKNELQNF PELSLPLVDY VQTGNKRPGF VPASDSRTSA PVVLVIDECL DEPHLQHLQS 300
  301 SLHAFVDSLP QTTRLGIILY GRTVSIYDFS EDSVASADVI SGAKSPSAES MKALIYGTGV 360
  361 YLSPMHASLK VAHEIFSSLR PYTLNVPEAS RDRCLGTAVE AALAIIQGPS AEMSRGVVRR 420
  421 AGGNSRIIVC AGGPITYGPG SVPHSMSHPN YPYMEKTAIK WMENLGREAH RHNTVVDILC 480
  481 AGTCPLRVPI LQPLAKASGG VLVLHDDFGE AFGVDLQRAA TRAAGSHGLL EVRCSDDILI 540
  541 TQVIGPGEEA HSETHETFKS DAALSIQMLS VEETQSFSLS MENKRDIKSD HVFFQFAFHY 600
  601 SDVYQADVSR VITFKLPTVD SISAYLQSVE DEASAVLISK RTLLLAKNQK DAVDMRATVD 660
  661 ERIKDIALKF GSQVPKSKLY SFPKELSSLP ELLFHLRRGP LLGNIIGHED ERSVLRNLFL 720
  721 NASFDLSLRM VAPRCLMHQE GGTFEELPAY DLSMQSDKAV ILDHGTDVFI WLGAELSADE 780
  781 VKSAAVLAAC RTLAEELTEF RFPAPRILAF KEGSSQARYF VCRLIPAHKD PPYEQEARFP 840
  841 QIRTLTTEQR MKLKSSFIEF DEASFCEWMR SLKVVPPEPR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..143] PSI-BLAST 3.221849 No description for 1y0fB was found.
    2 View Details [144..880] PSI-BLAST 1000.0 No description for 2nupA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle