YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|18411740, gi\|...
Organism:	Arabidopsis thaliana
Length:	880 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18411740, gi|....

Description	E-value	Query Range	Subject Range
gi\|91086195 - gi\|91086195\|ref\|XP_971475.1\| PREDICTED: similar to protein transport protein sec23 [Tribolium castan...	682.0	[0..143]	[879..1]
AGAP001759-PA - protein transport protein SEC23\|protein_coding\|2R:9479550:9482903:1\|gene:AGAP001759 gi\|55233595, gi\|... - gi\|58395530\|ref\|XP_321324.2\| AGAP001759-PA [Anopheles gambiae str. PEST], gi\|55233595\|gb\|EAA01238.2\|...	679.0	[0..143]	[879..1]
gi\|63102435 - gi\|63102435\|gb\|AAH95404.1\| Sec23 homolog B (S. cerevisiae) [Homo sapiens]	677.0	[0..143]	[879..1]
gi\|13365827 - gi\|13365827\|dbj\|BAB39299.1\| hypothetical protein [Macaca fascicularis]	676.0	[0..143]	[879..1]
gi\|74204998 - gi\|74204998\|dbj\|BAE20977.1\| unnamed protein product [Mus musculus]	675.0	[0..77]	[878..1]
gi\|73991096, gi\|... - gi\|73991096\|ref\|XP_857053.1\| PREDICTED: similar to Sec23 (S. cerevisiae) homolog B isoform 10 [Canis...	675.0	[0..143]	[879..1]
gi\|62645966, gi\|... - gi\|62645966\|ref\|XP_342532.2\| PREDICTED: similar to Protein transport protein Sec23B (SEC23-related p...	673.0	[0..143]	[879..1]
gi\|108876572, gi... - gi\|157116183\|ref\|XP_001652784.1\| protein transport protein sec23 [Aedes aegypti], gi\|108876572\|gb\|EA...	673.0	[0..143]	[879..1]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLPKSSVN YPGTLTPLEP NRPSPQPDRT PVPHSPPVVA SPIPPRFPQP SFRPDQMSSP  60
   61 SMKSPSLLSP ANGIRTGSPI PRLSTPPGPP VFNTPVKPAA VPFRTSPATP QPMAYSSANS 120
  121 SLPVSTPSFY SNGSSVGSQR DLP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.221849
Match:	1y0fB
Description:	No description for 1y0fB was found.

Predicted Domain #2

Region A:
Residues: [144-880]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVVRMEEPIA ADSPYVLFSA NKVLKQKKLA NVASLGFGAI VSAGREISPG PQIIQRDPHR  60
   61 CLNCGAYSNP YSSILIGSGQ WQCVICENMN GSKGEYVASS KNELQNFPEL SLPLVDYVQT 120
  121 GNKRPGFVPA SDSRTSAPVV LVIDECLDEP HLQHLQSSLH AFVDSLPQTT RLGIILYGRT 180
  181 VSIYDFSEDS VASADVISGA KSPSAESMKA LIYGTGVYLS PMHASLKVAH EIFSSLRPYT 240
  241 LNVPEASRDR CLGTAVEAAL AIIQGPSAEM SRGVVRRAGG NSRIIVCAGG PITYGPGSVP 300
  301 HSMSHPNYPY MEKTAIKWME NLGREAHRHN TVVDILCAGT CPLRVPILQP LAKASGGVLV 360
  361 LHDDFGEAFG VDLQRAATRA AGSHGLLEVR CSDDILITQV IGPGEEAHSE THETFKSDAA 420
  421 LSIQMLSVEE TQSFSLSMEN KRDIKSDHVF FQFAFHYSDV YQADVSRVIT FKLPTVDSIS 480
  481 AYLQSVEDEA SAVLISKRTL LLAKNQKDAV DMRATVDERI KDIALKFGSQ VPKSKLYSFP 540
  541 KELSSLPELL FHLRRGPLLG NIIGHEDERS VLRNLFLNAS FDLSLRMVAP RCLMHQEGGT 600
  601 FEELPAYDLS MQSDKAVILD HGTDVFIWLG AELSADEVKS AAVLAACRTL AEELTEFRFP 660
  661 APRILAFKEG SSQARYFVCR LIPAHKDPPY EQEARFPQIR TLTTEQRMKL KSSFIEFDEA 720
  721 SFCEWMRSLK VVPPEPR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2nupA
Description:	No description for 2nupA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits