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Protein Overview: gi|41619330, gi|...

General Information:
Name(s) found: gi|7263579 [NCBI NR]
gi|7242487 [NCBI NR]
gi|41619330 [NCBI NR]
gi|24899815 [NCBI NR]
gi|18415694 [NCBI NR]
Description(s) found:
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  • gi|7263579|emb|CAB81661.1| putative transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|7242487|emb|CAB77384.1| putative transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|41619330|gb|AAS10077.1| MYB transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|24899815|gb|AAN65122.1| myb-related protein M4 [Arabidopsis thaliana] [NCBI NR]
  • gi|18415694|ref|NP_567626.1| ATMYB102 (ARABIDOPSIS MYB-LIKE 102); DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • putative transcription factor [Arabidopsis thaliana]gi|7242487|emb|CAB77384.1| putative transcription factor [Arabidopsis thaliana]gi|18415694|ref|NP_567626.1| myb family transcription factor (MYB102) [Arabidopsis thaliana]gi|41619330|gb|AAS10077.1| MY [nrdb_11152004_Chlamydomonas]
  • | Symbols: ATMYB102, ATM4 | ATM4/ATMYB102 (ARABIDOPSIS MYB-LIKE 102); DNA binding / transcription factor | chr4:11418436-11419663 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • myb-related protein M4 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • MYB transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATMYB102, ATM4, MYB102 | MYB-like 102 | chr4:11418425-11419652 REVERSE LENGTH=350 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • MYB transcription factor OS=Arabidopsis thaliana GN=MYB102 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 350 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: response to abscisic acid stimulus [IEP]
    response to salt stress [IEP]
    response to osmotic stress [IEP]
    response to wounding [IEP]
    regulation of transcription [TAS]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSPCCEKN GLKKGPWTSE EDQKLVDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY  60
   61 LRPDIKRGRF SFEEEETIIQ LHSFLGNKWS AIAARLPGRT DNEIKNFWNT HIRKKLLRMG 120
  121 IDPVTHSPRL DLLDISSILA SSLYNSSSHH MNMSRLMMDT NRRHHQQHPL VNPEILKLAT 180
  181 SLFSQNQNQN LVVDHDSRTQ EKQTVYSQTG VNQYQTNQYF ENTITQELQS SMPPFPNEAR 240
  241 QFNNMDHHFN GFGEQNLVST STTSVQDCYN PSFNDYSSSN FVLDPSYSDQ SFNFANSVLN 300
  301 TPSSSPSPTT LNSSYINSSS CSTEDEIESY CSNLMKFDIP DFLDVNGFII

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..111] PSI-BLAST 41.69897 c-Myb, DNA-binding domain
    2 View Details [112..350] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle