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Protein Overview: CAF1P_ORYSJ

General Information:
Name(s) found: CAF1P_ORYSJ [Swiss-Prot]
Description(s) found:
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  • gi|75109409|sp|Q5VMQ5.1|CAF1P_ORYSJ RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor [NCBI NR]
  • gi|55297612|dbj|BAD68987.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|55297418|dbj|BAD69270.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|222618506|gb|EEE54638.1| hypothetical protein OsJ_01906 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|215694476|dbj|BAG89423.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115436730|ref|NP_001043122.1| Os01g0495900 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113532653|dbj|BAF05036.1| Os01g0495900 [Oryza sativa Japonica Group] [NCBI NR]
  • CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0495900 PE=2 SV=1 [Swiss-Prot]
  • putative CRS2-associated factor 1 [Oryza sativa (japonica cultivar-group)]gi|55297418|dbj|BAD69270.1| putative CRS2-associated factor 1 [Oryza sativa (japonica cultivar-group)] [nrdb_11152004_Chlamydomonas]
  • Os01g0495900 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
  • putative CRS2-associated factor 1 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 701 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSHLTSRS LLVQAQYPIS RLPSNLRLSL SHHKQPAAVA KRRRAPAPSH PAFSSVIRGR  60
   61 PKKVPIPENG EPAAGVRVTE RGLAYHLDGA PFEFQYSYTE TPRARPVALR EAPFLPFGPE 120
  121 VTPRPWTGRK PLPKSRKELP EFDSFMLPPP GKKGVKPVQS PGPFLAGTEP RYQAASREEV 180
  181 LGEPLTKEEV DELVKATLKT KRQLNIGRDG LTHNMLENIH SHWKRKRVCK IKCKGVCTVD 240
  241 MDNVCQQLEE KVGGKVIHHQ GGVIFLFRGR NYNYRTRPIY PLMLWKPAAP VYPRLVKKIP 300
  301 DGLTPDEAED MRKRGRQLPP ICKLGKNGVY LNLVKQVREA FEACDLVRVD CSGLNKSDCR 360
  361 KIGAKLKDLV PCTLLSFEFE HILMWRGNDW KSSLPPLEEN DFKVASDQIL NSKEAGSGSA 420
  421 LTPIELVNNA TSLKKCNLIE GAEKLEDSMK SSFENGMILG SACGNPGVCN SEGIDGTESS 480
  481 ADAPIEFSPS NSARDLDPSQ TSTLYCQSSL LDKSENGELI EMYPDRCGNS EQSPDVPEAL 540
  541 TCLMGSSDEI HELETMRRNC KHLNGSDGVN SDSIVPSYME GILLLFKQAI DSGMALVLNE 600
  601 NEFADANYVY QKSVAFTKTA PRYLVLRHTP RKSHGTQKTE PAKNVRINKH LEEHKVSDHV 660
  661 KKKEIVMGGS RMQRNDHARE FLSDVVPQGT LRVDELAKLL A

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..79] MSA 1.011994 View MSA. No confident structure predictions are available.
    2 View Details [80..182] deduced N/A No confident structure predictions are available.
    3 View Details [183..277] PSI-BLAST 31.69897 YhbY homologue HI1333
    4 View Details [278..472] FFAS03 3.92 hypothetical protein YhbY
    5 View Details [473..701] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle