YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|51969988, gi|...

General Information:
Name(s) found: gi|79323918 [NCBI NR]
gi|51969988 [NCBI NR]
gi|51969720 [NCBI NR]
Description(s) found:
Found 11 descriptions.
SHOW ALL
  • gi|79323918|ref|NP_001031463.1| DNA topoisomerase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|51969988|dbj|BAD43686.1| putative DNA topoisomerase III beta [Arabidopsis thaliana] [NCBI NR]
  • gi|51969720|dbj|BAD43552.1| putative DNA topoisomerase III beta [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 838 amino acids

    Gene Ontology:
    Cellular Component: chromosome [IEA]
    Biological Process: DNA topological change [IEA]
    DNA metabolic process [IEA]
    DNA unwinding involved in replication [IEA]
    Molecular Function: nucleic acid binding [IEA]
    DNA binding [IEA]
    DNA topoisomerase activity [IEA]
    DNA topoisomerase type I activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARCLQGEAV QRCMNLMACF EASKHIIELH LLSVMFSDFP EKYQNWATID PQDLFDAPII  60
   61 KKESNPKAHI CRHLSNEARG CSYMVLWLDC DREGENICFE VIESTGFDMK DSKRKVYRAR 120
  121 FSSVTEKDIS KAMDNLVEPN RDEALAVDAR QEIDLKVGVA FSRFQTSYFQ GKYQNLDCRV 180
  181 ISYGPCQTPT LGFCVQRYMH INTFKPEKFW ALRPYIRKDG YELQLEWERR RLFDLEAATV 240
  241 FQKLVVEGRT AKVMDVSEKQ EVKGRPAGLN TVNLLKVASS ALGFGPQTAM HLAERLYTQG 300
  301 FISYPRTEST AYPSSFDFTD TLRAQVSNPV WGGYVQRLLS DGFHMPKSGT DAGDHPPITP 360
  361 MRAATEVMVG GDAWRLYQYV CQHFLGTVSP NCKYIRTKVE LSIGGETFHC TGQRVTEKGF 420
  421 TAIMPWSAVD EKKLPSFLKG ERIEVLRVEL YEGNTAPPDY LTESELISLM EKHGIGTDAS 480
  481 IAVHINNIGE RNYVQVQSGR KMVPTALGIT LIRGYQCIDP DLCLPDIRSF IEQQITLVAK 540
  541 GQADHSHVVQ HVIQQFRRKF SYFVQQIEHM DALFEAQFSP LADSGRALSK CGKCLRYMKH 600
  601 ITAVPPRLFC GTCEEVYYLP QKGTVKLYKE LTCPLDNFEL VIYSVPGPEG KSFPLCPYCY 660
  661 NSPPFEGIDT LFGASKTPNA PAKTKTGAGM PCSLCPHPTC QHSVRNQGVC ACPECEGTLV 720
  721 LDPVSFPKWK LNCNLCSCIV LLPEGAHRIT TTSNRCPECD SAIIEIDFNK KTTPLENGAT 780
  781 LHQGCVLCDE LLLSLVEVKH GRSFVRRGGR GRGRGRGRGR GGRRGSKSVD PKMSFRDF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..595] PSI-BLAST 179.0 AMINO TERMINAL 67KDA DOMAIN OF ESCHERICHIA COLI DNA TOPOISOMERASE I (RESIDUES 2-590 OF MATURE PROTEIN) CLONING ARTIFACT ADDS TWO RESIDUES TO THE AMINO-TERMINUS WHICH WERE NOT OBSERVED IN THE EXPERIMENTAL ELECTRON DENSITY (GLY-2, SER-1).
    2 View Details [596..676] PSI-BLAST 15.0 Five-finger GLI1
    3 View Details [677..838] PSI-BLAST 51.154902 No description for 2i13A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle