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View Structure Prediction Details

Protein: gi|51969988, gi|...
Organism: Arabidopsis thaliana
Length: 838 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|51969988, gi|....

Predicted Domain #1
Region A:
Residues: [1-595]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARCLQGEAV QRCMNLMACF EASKHIIELH LLSVMFSDFP EKYQNWATID PQDLFDAPII  60
   61 KKESNPKAHI CRHLSNEARG CSYMVLWLDC DREGENICFE VIESTGFDMK DSKRKVYRAR 120
  121 FSSVTEKDIS KAMDNLVEPN RDEALAVDAR QEIDLKVGVA FSRFQTSYFQ GKYQNLDCRV 180
  181 ISYGPCQTPT LGFCVQRYMH INTFKPEKFW ALRPYIRKDG YELQLEWERR RLFDLEAATV 240
  241 FQKLVVEGRT AKVMDVSEKQ EVKGRPAGLN TVNLLKVASS ALGFGPQTAM HLAERLYTQG 300
  301 FISYPRTEST AYPSSFDFTD TLRAQVSNPV WGGYVQRLLS DGFHMPKSGT DAGDHPPITP 360
  361 MRAATEVMVG GDAWRLYQYV CQHFLGTVSP NCKYIRTKVE LSIGGETFHC TGQRVTEKGF 420
  421 TAIMPWSAVD EKKLPSFLKG ERIEVLRVEL YEGNTAPPDY LTESELISLM EKHGIGTDAS 480
  481 IAVHINNIGE RNYVQVQSGR KMVPTALGIT LIRGYQCIDP DLCLPDIRSF IEQQITLVAK 540
  541 GQADHSHVVQ HVIQQFRRKF SYFVQQIEHM DALFEAQFSP LADSGRALSK CGKCL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 179.0
Match: 1eclA
Description: AMINO TERMINAL 67KDA DOMAIN OF ESCHERICHIA COLI DNA TOPOISOMERASE I (RESIDUES 2-590 OF MATURE PROTEIN) CLONING ARTIFACT ADDS TWO RESIDUES TO THE AMINO-TERMINUS WHICH WERE NOT OBSERVED IN THE EXPERIMENTAL ELECTRON DENSITY (GLY-2, SER-1).
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [596-676]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RYMKHITAVP PRLFCGTCEE VYYLPQKGTV KLYKELTCPL DNFELVIYSV PGPEGKSFPL  60
   61 CPYCYNSPPF EGIDTLFGAS K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.0
Match: 2gliA
Description: Five-finger GLI1
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [677-838]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPNAPAKTKT GAGMPCSLCP HPTCQHSVRN QGVCACPECE GTLVLDPVSF PKWKLNCNLC  60
   61 SCIVLLPEGA HRITTTSNRC PECDSAIIEI DFNKKTTPLE NGATLHQGCV LCDELLLSLV 120
  121 EVKHGRSFVR RGGRGRGRGR GRGRGGRRGS KSVDPKMSFR DF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.154902
Match: 2i13A
Description: No description for 2i13A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle