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Protein Overview: gi|42568781, gi|...

General Information:
Name(s) found: gi|94442467 [NCBI NR]
gi|51968502 [NCBI NR]
gi|42568781 [NCBI NR]
Description(s) found:
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  • gi|94442467|gb|ABF19021.1| At5g65080 [Arabidopsis thaliana] [NCBI NR]
  • gi|51968502|dbj|BAD42943.1| MADS box protein FCL1 [Arabidopsis thaliana] [NCBI NR]
  • gi|42568781|ref|NP_201313.2| MAF5 (MADS AFFECTING FLOWERING 5); transcription factor [Arabidopsis thaliana] [NCBI NR]
  • MADS box protein FCL1 [Arabidopsis thaliana]gi|42568781|ref|NP_201313.2| MADS-box family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 MADS-box family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: MAF5, AGL68 | AGL68/MAF5 (MADS AFFECTING FLOWERING 5); transcription factor | chr5:26014876-26019437 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • MADS box protein FCL1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • MAF5 (MADS AFFECTING FLOWERING 5 VARIANT I); transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g65080 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: MAF5, AGL68 | K-box region and MADS-box transcription factor family protein | chr5:25997650-26002211 FORWARD LENGTH=205 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At5g65080 OS=Arabidopsis thaliana GN=MAF5 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 205 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: negative regulation of flower development [IMP]
    vernalization response [IEP]
    Molecular Function: transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCRKSEAMGR RRVEIKRIEN KSSRQVTFCK RRNGLMEKAR QLSILCGSSV ALFIVSSTGK  60
   61 LYNSSSGDSM AKIISRFKIQ QADDPETLDL EDKTQDYLSH KELLEIVQRK IEEAKGDNVS 120
  121 IESLISMEEQ LKSALSVIRA RKTELLMELV KNLQDKEKLL KEKNKVLASE VGKLKKILET 180
  181 GDERAVMSPE NSSGHSPPET LPLLK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..80] PSI-BLAST 19.69897 Mechanism of recruitment of class II histone deacetylases by myocyte enhancer factor-2
    2 View Details [81..205] Pfam 3.522879 No description for PF01486.8 was found. Confident ab initio structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.0368771990474 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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