YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|15080778

General Information:
Name(s) found: gi|15080778 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|15080778|gb|AAK83568.2| collagen type a1(XI)6A-7 [Rattus norvegicus] [NCBI NR]
  • collagen type a1(XI)6A-7 [Rattus norvegicus] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10116 COLLAGEN TYPE A1 [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
    • Organism: Rattus norvegicus
    Length: 91 amino acids

    Gene Ontology:
    Cellular Component: collagen [UNKNOWN][IEA]
    collagen type XI [UNKNOWN]
    extracellular matrix [UNKNOWN][IDA]
    Biological Process: ventricular cardiac muscle tissue morphogenesis [UNKNOWN]
    chondrocyte development [UNKNOWN]
    cell adhesion [IEA]
    visual perception [UNKNOWN]
    proteoglycan metabolic process [UNKNOWN]
    skeletal system morphogenesis [UNKNOWN]
    embryonic skeletal system morphogenesis [UNKNOWN]
    sensory perception of sound [UNKNOWN]
    heart morphogenesis [UNKNOWN]
    cartilage condensation [UNKNOWN]
    ossification [IEP]
    inner ear morphogenesis [UNKNOWN]
    collagen fibril organization [UNKNOWN][TAS]
    detection of mechanical stimulus involved in sensory perception of sound [UNKNOWN]
    cartilage development [UNKNOWN]
    Molecular Function: extracellular matrix structural constituent [IEA][TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YAPEDIIEYD YEYGETDYKE AESVTEMPTV TEETVAQTEA NIVDDFQDYN YGTMETYQTE  60
   61 SPRRVSGSNE INGHGAYGEK GQKGEPAVVE P

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle