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Protein Overview: TYRA1_ARATH

General Information:
Name(s) found: TYRA1_ARATH [Swiss-Prot]
Description(s) found:
Found 9 descriptions.
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  • Arogenate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=TYRAAT1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 640 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: tyrosine biosynthetic process [IEA][ISS]
    metabolic process [IEA]
    Molecular Function: catalytic activity [IEA]
    binding [IEA]
    prephenate dehydrogenase (NADP+) activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAETLITKPP LSLSFTSLSS MLPSLSLSTA NRHLSVTDTI PLPNSNSNAT PPLRIAIIGF  60
   61 GNYGQFLAET LISQGHILFA HSRSDHSSAA RRLGVSYFTD LHDLCERHPD VVLLCTSILS 120
  121 IENILKTLPF QRLRRNTLFV DVLSVKEFAK TLLLQYLPED FDILCTHPMF GPQSVSSNHG 180
  181 WRGLRFVYDK VRIGEERLRV SRCESFLEIF VREGCEMVEM SVTDHDKFAA ESQFITHTLG 240
  241 RLLGMLKLIS TPINTKGYEA LLDLAENICG DSFDLYYGLF VYNNNSLEVL ERIDLAFEAL 300
  301 RKELFSRLHG VVRKQSFEGE AKKVHVFPNC GENDASLDMM RSEDVVVKYE YNSQVSGSVN 360
  361 DGSRLKIGIV GFGNFGQFLG KTMVKQGHTV LAYSRSDYTD EAAKLGVSYF SDLDDLFEEH 420
  421 PEVIILCTSI LSTEKVLESL PFQRLKRSTL FVDVLSVKEF PRNLFLQTLP QDFDILCTHP 480
  481 MFGPESGKNG WNNLAFVFDK VRIGMDDRRK SRCNSFLDIF AREGCRMVEM SCAEHDWHAA 540
  541 GSQFITHTVG RLLEKLSLES TPIDTKGYET LLKLVENTAG DSFDLYYGLF LYNPNAMEQL 600
  601 ERFHVAFESL KTQLFGRLHS QHSHELAKSS SPKTTKLLTS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..167] PSI-BLAST 42.30103 Phosphoglycerate dehydrogenase; Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
    2 View Details [168..564] PSI-BLAST 16.221849 K185N mutated S-adenosylhomocysteine hydrolase
    3 View Details [565..640] PSI-BLAST 41.045757 Crystal Structure of Prephenate Dehydrogenase from Aquifex aeolicus

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  2.16785883389468 bayes_pls_golite062009
  • oxidoreductase activity
    		•  1.95477050413 bayes_pls_golite062009
  • prephenate dehydrogenase activity
    		•  1.03016160419952 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  0.771153340292 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  0.66554302844944 bayes_pls_golite062009
    2
    Term Confidence Notes
  • catalytic activity
    		•  2.16785883389468 bayes_pls_golite062009
  • oxidoreductase activity
    		•  1.95477050413 bayes_pls_golite062009
  • prephenate dehydrogenase activity
    		•  1.03016160419952 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  0.771153340292 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  0.66554302844944 bayes_pls_golite062009
    3
    Term Confidence Notes
  • prephenate dehydrogenase activity
    		•  3.08309370139945 bayes_pls_golite062009
  • catalytic activity
    		•  2.20335378247333 bayes_pls_golite062009
  • oxidoreductase activity
    		•  2.187844467027 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  1.16905220290347 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  1.1572935216705 bayes_pls_golite062009
  • pyrroline-5-carboxylate reductase activity
    		•  0.97274261484059 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle