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Protein Overview: gi|16226450, gi|...

General Information:
Name(s) found: gi|18416375 [NCBI NR]
gi|16323254 [NCBI NR]
gi|16226450 [NCBI NR]
gi|14335060 [NCBI NR]
Description(s) found:
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  • gi|18416375|ref|NP_568238.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|16323254|gb|AAL15361.1| AT5g10780/T30N20_50 [Arabidopsis thaliana] [NCBI NR]
  • gi|16226450|gb|AAL16171.1|AF428403_1 AT5g10780/T30N20_50 [Arabidopsis thaliana] [NCBI NR]
  • gi|14335060|gb|AAK59794.1| AT5g10780/T30N20_50 [Arabidopsis thaliana] [NCBI NR]
  • AT5g10780/T30N20_50 [Arabidopsis thaliana]gi|16226450|gb|AAL16171.1| AT5g10780/T30N20_50 [Arabidopsis thaliana]gi|14335060|gb|AAK59794.1| AT5g10780/T30N20_50 [Arabidopsis thaliana]gi|18416375|ref|NP_568238.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein, HSPC184, Homo sapiens, EMBL:AF151018 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | similar to unknown [Populus trichocarpa] (GB:ABK95804.1); contains InterPro domain Uncharacterised conserved protein UCP017207, transmembrane-p85 (InterPro:IPR016687); contains InterPro domain Protein of unknown function DUF1077 (InterPro:IP [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • AT5g10780/T30N20_50 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | similar to unknown [Populus trichocarpa] (GB:ABK95804.1); contains InterPro domain Uncharacterised conserved protein UCP017207, transmembrane-p85 (InterPro:IPR016687); contains InterPro domain Protein of unknown function DUF1077 (InterPro:IPR009445) | chr5:3408423-3409760 FORWARD [TAIR_A_Thaliana_na_04-12-2008_reversed.fasta]
  • | Symbols: | CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3408422-3409759 FORWARD LENGTH=180 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT5g10780/T30N20_50 OS=Arabidopsis thaliana GN=At5g10780 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of A8MQD8, AT5g10780/T30N20_50 OS=Arabidopsis thaliana GN=At5g10780 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 180 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKGKAVMGT GRRWAVEFSD QSTVPSSRDI LDPPGFSRAS QEQDDSANSR QKKDAEATWK  60
   61 LQKAWEVAQS PFKNLMMMGF MMWMAGNTVH LFSIGITFSA LWQPISALQS VGKIFEPFKD 120
  121 NKVELLMPKL VFLALNLGGL ALGVWKLNTL GLLPTHASDW VSSLPPPQEV EHSGGGFVFH 180
  181

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..180] Pfam 91.259637 No description for PF06417.3 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle