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Protein Overview: SLU7B_ARATH

General Information:
Name(s) found: SLU7B_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|18419978|ref|NP_568017.1| SMP2; single-stranded RNA binding [Arabidopsis thaliana] [NCBI NR]
  • gi|15912281|gb|AAL08274.1| AT4g37120/C7A10_240 [Arabidopsis thaliana] [NCBI NR]
  • gi|148887129|sp|O23174.3|SLU7B_ARATH RecName: Full=Pre-mRNA-splicing factor SLU7-B [NCBI NR]
  • Pre-mRNA-splicing factor SLU7-B OS=Arabidopsis thaliana GN=At4g37120 PE=2 SV=3 [Swiss-Prot]
  • AT4g37120/C7A10_240 [Arabidopsis thaliana]gi|18419978|ref|NP_568017.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: SMP2 | SMP2 (swellmap 2) | chr4:17486673-17489117 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • AT4g37120/C7A10_240 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • SMP2 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SMP2 | Pre-mRNA splicing Prp18-interacting factor | chr4:17486679-17489123 FORWARD LENGTH=536 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 536 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: RNA splicing [TAS]
    positive regulation of cell proliferation [IGI]
    Molecular Function: single-stranded RNA binding [TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATASVAFKS REDHRKKLEL EEARKAGLAP AEVDEDGKEI NPHIPEYMSK APWYLKSEQP  60
   61 SLKHQKNWKI EPEPKKIWYD RGKKIYQAEQ YRKGACINCG AMTHSSKACM DRPRKIGAKY 120
  121 TNMNIAADEK IESFELDYDG KRDRWNGYDT STYRHVVDRY DAKEEARKKY LKEQQLKKLE 180
  181 EKNNNENGDD ATSDGEEDLD DLRVDEAKVD ESRQMDFAKV EKRVRTTGGG STGTVRNLRI 240
  241 REDTAKYLLN LDVNSAHYDP KTRSMREDPL PDADPNEKFY LGDNQYRNSG QALEFKQINI 300
  301 HSCEAFDKGH DMHMQAAPSQ AELLYKNFKV AKEKLKTQTK DTIMEKYGNA ATEGEIPMEL 360
  361 LLGQSERQIE YDRAGRIMKG QEVIIPKSKY EEDVHANNHT SVWGSWWKDH QWGYKCCQQT 420
  421 IRNSYCTGSA GIEAAEASID LMKANIARKE ASKESPKKVE EKKMATWGTD IPEDLELNEE 480
  481 ALANALKKED LSRREEKDER KRKYNVNYTN DVTSEEMEAY RMKRVHHEDP MRNFPG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..67] MSA 1.039997 View MSA. No confident structure predictions are available.
    2 View Details [68..126] FFAS03 1.03 HIV nucleocapsid
    3 View Details [127..347] deduced N/A No confident structure predictions are available.
    4 View Details [348..426] MSA 3.041986 View MSA. No confident structure predictions are available.
    5 View Details [427..536] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle