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Protein Overview: gi|18411298, gi|...

General Information:
Name(s) found: gi|18411298 [NCBI NR]
gi|15811367 [NCBI NR]
Description(s) found:
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  • gi|18411298|ref|NP_565144.1| PRAF1; Ran GTPase binding / chromatin binding / zinc ion binding [Arabidopsis thaliana] [NCBI NR]
  • gi|15811367|gb|AAL08940.1| zinc finger protein [Arabidopsis thaliana] [NCBI NR]
  • zinc finger protein [Arabidopsis thaliana]gi|18411298|ref|NP_565144.1| zinc finger protein (PRAF1) / regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: PRAF1 | PRAF1; Ran GTPase binding / chromatin binding / zinc ion binding | chr1:28911846-28916219 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Ran GTPase binding / chromatin binding / zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • zinc finger protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: PRAF1 | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr1:28906952-28911325 FORWARD LENGTH=1103 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Regulator of chromosome condensation and FYVE zinc finger domain-containing protein OS=Arabidopsis thaliana GN=PRAF1 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1103 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: zinc ion binding [IEA][ISS]
    chromatin binding [ISS]
    Ran GTPase binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLVTYSNA DHNLEQALIT LKKGTQLLKY GRKGKPKFYP FRLSSDEKSL IWISSSGEKR  60
   61 LKLASVSKIV PGQRTAVFQR YLRPEKDYLS FSLLYNGKKK SLDLICKDKV EAEIWIGGLK 120
  121 TLISTGQGGR SKIDGWSGGG LSVDASRELT SSSPSSSSAS ASRGHSSPGT PFNIDPITSP 180
  181 KSAEPEVPPT DSEKSHVALD NKNMQTKVSG SDGFRVSVSS AQSSSSHGSA ADDSDALGDV 240
  241 YIWGEVICDN VVKVGIDKNA SYLTTRTDVL VPKPLESNIV LDVHQIACGV RHAAFVTRQG 300
  301 EIFTWGEESG GRLGHGIGKD VFHPRLVESL TATSSVDFVA CGEFHTCAVT LAGELYTWGD 360
  361 GTHNVGLLGH GSDISHWIPK RIAGSLEGLH VASVSCGPWH TALITSYGRL FTFGDGTFGV 420
  421 LGHGDKETVQ YPREVESLSG LRTIAVSCGV WHTAAVVEII VTQSNSSSVS SGKLFTWGDG 480
  481 DKNRLGHGDK DPRLKPTCVP ALIDYNFHKI ACGHSLTVGL TTSGQVFTMG STVYGQLGNL 540
  541 QTDGKLPCLV EDKLASEFVE EISCGAYHVA ALTSRNEVYT WGKGANGRLG HGDLEDRKVP 600
  601 TIVEALKDRH VKYIACGSNY TAAICLHKWV SGAEQSQCST CRLAFGFTRK RHNCYNCGLV 660
  661 HCHSCSSKKA FRAALAPSAG RLYRVCDSCY VKLSKVSEIN DTNRRNSAVP RLSGENRDRL 720
  721 DKSEIRLAKF GTSNMDLIKQ LDSKAAKQGK KTDTFSLGRN SQLPSLLQLK DAVQSNIGDM 780
  781 RRATPKLAQA PSGISSRSVS PFSRRSSPPR SATPMPSTSG LYFPVGIADN MKKTNEILNQ 840
  841 EIVKLRTQVD SLTQKCEFQE VELQNSVKKT QEALALAEEE SAKSRAAKEA IKSLIAQLKD 900
  901 VAEKLPPGES VKLACLQNGL DQNGFHFPEE NGFHPSRSES MTSSISSVAP FDFAFANASW 960
  961 SNLQSPKQTP RASERNSNAY PADPRLSSSG SVISERIEPF QFQNNSDNGS SQTGVNNTNQ1020
 1021 VEAEWIEQYE PGVYITLVAL HDGTRDLRRV RFSRRRFGEH QAETWWSENR EKVYEKYNVR1080
 1081 VSEKSTASQT HRDRDEEEED IPH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..135] PSI-BLAST 10.0 STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN FROM PHOSPHOLIPASE C DELTA IN COMPLEX WITH INOSITOL TRISPHOSPHATE
    2 View Details [136..238] deduced N/A No confident structure predictions are available.
    3 View Details [239..668] PSI-BLAST 91.39794 Regulator of chromosome condensation RCC1
    4 View Details [669..736] deduced N/A No confident structure predictions are available.
    5 View Details [737..1103] PSI-BLAST 17.0 Heavy meromyosin subfragment


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle