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View Structure Prediction Details

Protein: gi|18411298, gi|...
Organism: Arabidopsis thaliana
Length: 1103 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|18411298, gi|....

Predicted Domain #1
Region A:
Residues: [1-135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLVTYSNA DHNLEQALIT LKKGTQLLKY GRKGKPKFYP FRLSSDEKSL IWISSSGEKR  60
   61 LKLASVSKIV PGQRTAVFQR YLRPEKDYLS FSLLYNGKKK SLDLICKDKV EAEIWIGGLK 120
  121 TLISTGQGGR SKIDG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.0
Match: 1maiA
Description: STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN FROM PHOSPHOLIPASE C DELTA IN COMPLEX WITH INOSITOL TRISPHOSPHATE
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [136-238]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WSGGGLSVDA SRELTSSSPS SSSASASRGH SSPGTPFNID PITSPKSAEP EVPPTDSEKS  60
   61 HVALDNKNMQ TKVSGSDGFR VSVSSAQSSS SHGSAADDSD ALG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [239-668]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVYIWGEVIC DNVVKVGIDK NASYLTTRTD VLVPKPLESN IVLDVHQIAC GVRHAAFVTR  60
   61 QGEIFTWGEE SGGRLGHGIG KDVFHPRLVE SLTATSSVDF VACGEFHTCA VTLAGELYTW 120
  121 GDGTHNVGLL GHGSDISHWI PKRIAGSLEG LHVASVSCGP WHTALITSYG RLFTFGDGTF 180
  181 GVLGHGDKET VQYPREVESL SGLRTIAVSC GVWHTAAVVE IIVTQSNSSS VSSGKLFTWG 240
  241 DGDKNRLGHG DKDPRLKPTC VPALIDYNFH KIACGHSLTV GLTTSGQVFT MGSTVYGQLG 300
  301 NLQTDGKLPC LVEDKLASEF VEEISCGAYH VAALTSRNEV YTWGKGANGR LGHGDLEDRK 360
  361 VPTIVEALKD RHVKYIACGS NYTAAICLHK WVSGAEQSQC STCRLAFGFT RKRHNCYNCG 420
  421 LVHCHSCSSK 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 91.39794
Match: 1a12A
Description: Regulator of chromosome condensation RCC1
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [669-736]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KAFRAALAPS AGRLYRVCDS CYVKLSKVSE INDTNRRNSA VPRLSGENRD RLDKSEIRLA  60
   61 KFGTSNMD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [737-1103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIKQLDSKAA KQGKKTDTFS LGRNSQLPSL LQLKDAVQSN IGDMRRATPK LAQAPSGISS  60
   61 RSVSPFSRRS SPPRSATPMP STSGLYFPVG IADNMKKTNE ILNQEIVKLR TQVDSLTQKC 120
  121 EFQEVELQNS VKKTQEALAL AEEESAKSRA AKEAIKSLIA QLKDVAEKLP PGESVKLACL 180
  181 QNGLDQNGFH FPEENGFHPS RSESMTSSIS SVAPFDFAFA NASWSNLQSP KQTPRASERN 240
  241 SNAYPADPRL SSSGSVISER IEPFQFQNNS DNGSSQTGVN NTNQVEAEWI EQYEPGVYIT 300
  301 LVALHDGTRD LRRVRFSRRR FGEHQAETWW SENREKVYEK YNVRVSEKST ASQTHRDRDE 360
  361 EEEDIPH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.0
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle