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Protein Overview: DPOD1_ORYSJ

General Information:
Name(s) found: DPOD1_ORYSJ [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
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  • DNA polymerase delta catalytic subunit OS=Oryza sativa subsp. japonica GN=POLD1 PE=2 SV=1 [Swiss-Prot]
    • Organism: Oryza sativa Japonica Group
    Length: 1105 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGGRGGKR RGAPPPGPSG AAAKRAHPGG TPQPPPPAAT AAAPVAEEED MMDEDVFLDE  60
   61 TILAEDEEAL LLLDRDEALA SRLSRWRRPA LPADLASGCS RNVAFQQLEI DYVIGESHKV 120
  121 LLPNSSGPAA ILRIFGVTRE GHSVCCQVHG FEPYFYISCP MGMGPDDISR FHQTLEGRMK 180
  181 DSNRNSNVPR FVKRIELVQK QTIMHYQPQQ SQPFLKIVVA LPTMVASCRG ILERGITIEG 240
  241 LGSKSFLTYE SNILFALRFM IDCNIVGGNW IEVPAGKYMK AARIMSYCQL ELDCLYSDLV 300
  301 SHAAEGEHSK MAPFRILSFD IECAGRKGHF PEPTHDPVIQ IANLVTLQGE GQPFVRNVMT 360
  361 LKSCSPIVGV DVMSFDTERD VLLAWRDFIR EVDPDIIIGY NICKFDLPYL IERAEVLKIV 420
  421 EFPILGRIRN SRVRVRDTTF SSRQYGMRES KDVAVEGRVQ FDLLQAMQRD YKLSSYSLNS 480
  481 VSAHFLGEQK EDVHHSIISD LQNGNSETRR RLAVYCLKDA YLPQRLLDKL MYIYNYVEMA 540
  541 RVTGVPISFL LSRGQSIKVL SQLLRKAKQK NLVIPNIKGQ ASGQDTFEGA TVLEARAGFY 600
  601 EKPIATLDFA SLYPSIMMAY NLCYCTLVPP EDARKLNLPP ESVNKTPSGE TFVKPDVQKG 660
  661 ILPEILEELL AARKRAKADL KEAKDPFERA VLDGRQLALK ISANSVYGFT GATVGQLPCL 720
  721 EISSSVTSYG RQMIEHTKKL VEDKFTTLGG YEHNAEVIYG DTDSVMVQFG VSTVEDAMKL 780
  781 GREAADYISG TFIKPIKLEF EKIYFPYLLI SKKRYAGLYW TNPEKFDKMD TKGIETVRRD 840
  841 NCLLVKNLVT ECLHKILVDR DVPGAVQYVK NTISDLLMNR VDLSLLVITK GLTKTGEDYA 900
  901 VKAAHVELAE RMRKRDAATA PTVGDRVPYV IIKAAKGAKA YERSEDPIYV LDNNIPIDPQ 960
  961 YYLENQISKP LLRIFEPILK NASRELLHGS HTRAVSISTP SNSGIMKFAK KQLTCLGCKA1020
 1021 VISGSNQTLC FHCKGREAEL YCKTVGNVSE LEMLFGRLWT QCQECQGSLH QDVLCTSRDC1080
 1081 PIFYRRRKAQ KDMAEARVQL QRWDF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..940] PSI-BLAST 165.0 No description for 2gv9A was found.
    2 View Details [941..990] PSI-BLAST 156.0 Exonuclease domain of family B (archaeal and phage) DNA polymerases; T4-like DNA polymerase
    3 View Details [991..1105] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle