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Protein Overview: gi|213580794

General Information:
Name(s) found: gi|213580794 [NCBI NR]
Description(s) found:
  • gi|213580794|ref|ZP_03362620.1| tRNA modification GTPase TrmE [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] [NCBI NR]
    • Organism: Salmonella enterica subsp. enterica serovar Typhi str. E98-0664
    Length: 454 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHNDTIVAQ ATPPGRGGVG ILRISGLKAR DVAQEVLGKL PKPRYADYLP FKDVDGSALD  60
   61 QGIALWFPGP NSFTGEDVLE LQGHGGPVIL DLLLKRILTL PGVRIARPGE FSERAFLNDK 120
  121 LDLAQAEAIA DLIDASSEQA ARSALNSLQG AFSARVNHLV EALTHLRIYV EAAIDFPDEE 180
  181 IDFLSDGKIE AQLNGVIADL DAVRTEARQG SLLREGMKVV IAGRPNAGKS SLLNALAGRE 240
  241 AAIVTDIAGT TRDVLREHIH IDGMPLHIID TAGLRDANDE VERIGIERAW QEIEQADRVL 300
  301 FMVDGTTTDA VDPADIWPDF IARLPKNLPI TVVRNKADIT GETLGISEVN GHSLVRLSAR 360
  361 TGEGVDVLRN HLKQSMGFDT NMEGGFLARR RHLQALAEAA NHLEQGKAQL LGAWAGELLA 420
  421 EELRLAQQSL SEITGEFTSD DLLGRIFSSF CIGK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..454] PSI-BLAST 73.09691 Structure of the GTP-binding protein TrmE from Thermotoga maritima

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • methyltransferase activity
    		•  3.28983380541263 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  3.20782575104451 bayes_pls_golite062009
  • catalytic activity
    		•  1.65079399897053 bayes_pls_golite062009
  • transferase activity
    		•  1.3676947912529 bayes_pls_golite062009
  • coenzyme binding
    		•  1.08379167900905 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.913322399315129 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.738234102557832 bayes_pls_golite062009
  • RNA helicase activity
    		•  0.73539642422624 bayes_pls_golite062009
  • RNA-dependent ATPase activity
    		•  0.70759024918936 bayes_pls_golite062009
  • ATP-dependent RNA helicase activity
    		•  0.68122080550778 bayes_pls_golite062009
  • ATP binding
    		•  0.60527666756293 bayes_pls_golite062009
  • binding
    		•  0.604868700215668 bayes_pls_golite062009
  • aminomethyltransferase activity
    		•  0.573831999310668 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.573214556107072 bayes_pls_golite062009
  • ligase activity
    		•  0.417681194526243 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.390949264169589 bayes_pls_golite062009
  • DNA binding
    		•  0.376487324624615 bayes_pls_golite062009
  • translation regulator activity
    		•  0.29096092258568 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.274994961137851 bayes_pls_golite062009
  • structural molecule activity
    		•  0.0558641287316701 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle