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Protein Overview: gi|190407994

General Information:
Name(s) found: gi|190407994 [NCBI NR]
Description(s) found:
  • gi|190407994|gb|EDV11259.1| RNA polymerase II transcription factor B subunit 4 [Saccharomyces cerevisiae RM11-1a] [NCBI NR]
    • Organism: Saccharomyces cerevisiae RM11-1a
    Length: 338 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAISDPTFK HARSRKQVTE ESPSLLTVII EIAPKLWTTF DEEGNEKGSI IKVLEALIVF  60
   61 LNAHLAFNSA NKVAVIAAYS QGIKYLYPES TSALKASESE NKTRSDLKII NSDMYRRFRN 120
  121 VDETLVEEIY KLFELEKKQI EQNSQRSTLA GAMSAGLTYV NRISKESVTT SLKSRLLVLT 180
  181 CGSGSSKDEI FQYIPIMNCI FSATKMKCPI DVVKIGGSKE STFLQQTTDA TNGVYLHVES 240
  241 TEGLIQYLAT AMFIDPSLRP IIVKPNHGSV DFRTSCYLTG RVVAVGFICS VCLCVLSIIP 300
  301 PGNKCPACDS QFDEHVIAKL KRKPVVPRLK AKKKVTKP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..338] Pfam 188.552842 Transcription factor Tfb4 No confident structure predictions are available.
    2 View Details [240..338] FFAS03 0.954 No description for 2ozyA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.68315152218267 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.10023916482665 bayes_pls_golite062009
  • DNA binding
    		•  1.9295508897092 bayes_pls_golite062009
  • protein complex binding
    		•  1.65763332955233 bayes_pls_golite062009
  • protein binding
    		•  1.42792331963866 bayes_pls_golite062009
  • hydrolase activity
    		•  0.589248272940562 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.446181458443121 bayes_pls_golite062009
  • protein dimerization activity
    		•  0.244402438311177 bayes_pls_golite062009
  • protein heterodimerization activity
    		•  0.114607758890868 bayes_pls_golite062009
  • catalytic activity
    		•  0.0380261580236634 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.65

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle