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Protein Overview: gi|224466628, gi...

General Information:
Name(s) found: gi|224582101 [NCBI NR]
gi|224466628 [NCBI NR]
Description(s) found:
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  • gi|224582101|ref|YP_002635899.1| membrane-bound lytic murein transglycosylase d precursor [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] [NCBI NR]
  • gi|224466628|gb|ACN44458.1| membrane-bound lytic murein transglycosylase d precursor [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] [NCBI NR]
    • Organism: Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594
    Length: 455 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAKAILLAS VLLVGCQTSQ NTGNVQQHAQ SLSAAGQGEA GKFTSQARWM DDGTSIAPDQ  60
   61 DLWAFIGDEL KMGIPENSRI REQKQKYLRN KSYLHDVTLR AEPYMYWIAG QVKKRNMPME 120
  121 LVLLPIVESA FDPHATSGAN AAGIWQIIPS TGRNYGLKQT RNYDARRDVV ASTTAALDMM 180
  181 QRLNKMFDGD WLLTVAAYNS GEGRVMRAIK ANKARGKPTD FWSLSLPRET KLYVPKMLAL 240
  241 SEILKNSKRY GVRLPTTDES RALARVRLNS PVEMAQVADM AGMSISKLKT FNAGVKGSTL 300
  301 GVSGPQYVMV PKKHAEQLRE SLASGEIDAV QSQLIADNTP LNSRSYKVRS GDTLSGIASR 360
  361 LGVSTKDLQQ WNNLRGSRLK IGQSLTVGAG SSAQRLANNS DSITYRVRKG DSLSSIARRH 420
  421 GVNIKDVMRW NHDTDNLQPG DQLTLFVKDN STPDS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..261] PSI-BLAST 29.69897 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain; 70 kDa soluble lytic transglycosylase, SLT70
    2 View Details [262..391] MSA 4.442994 View MSA. No confident structure predictions are available.
    3 View Details [392..455] FFAS03 2.72 No description for 2djpA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • penicillin binding
    		•  2.64957480679626 bayes_pls_golite062009
  • catalytic activity
    		•  1.95328415115451 bayes_pls_golite062009
  • lysozyme activity
    		•  1.83799209924951 bayes_pls_golite062009
  • drug binding
    		•  1.54697929389118 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
    		•  1.16054683174437 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  1.07226857049823 bayes_pls_golite062009
  • hydrolase activity
    		•  0.677491712259 bayes_pls_golite062009
  • transferase activity, transferring glycosyl groups
    		•  0.45061419828567 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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