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Protein Overview: gi|197215260, gi...

General Information:
Name(s) found: gi|197251557 [NCBI NR]
gi|197215260 [NCBI NR]
Description(s) found:
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  • gi|197251557|ref|YP_002149065.1| DNA-directed RNA polymerase, beta' subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] [NCBI NR]
  • gi|197215260|gb|ACH52657.1| DNA-directed RNA polymerase, beta' subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] [NCBI NR]
    • Organism: Salmonella enterica subsp. enterica serovar Agona str. SL483
    Length: 1407 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDLLKFLKA QTKTEEFDAI KIALASPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR  60
   61 IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIELASP TAHIWFLKSL 120
  121 PSRIGLLLDM PLRDIERVLY FESYVVIEGG MTNLERQQIL TEEQYLDALE EFGDEFDAKM 180
  181 GAEAIQALLK SMDLEQECET LREELNETNS ETKRKKLTKR IKLLEAFVQS GNKPEWMILT 240
  241 VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ 300
  301 EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPY 360
  361 LRLHQCGLPK KMALELFKPF IYGKLELRGL ATTIKAAKKM VEREEAVVWD ILDEVIREHP 420
  421 VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA 480
  481 RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTRDCVNA KGEGMVLTGP KEAERIYRAG 540
  541 LASLHARVKV RITEYEKDEN GEFVAHTSLK DTTVGRAILW MIVPKGLPFS IVNQALGKKA 600
  601 ISKMLNTCYR ILGLKPTVIF ADQTMYTGFA YAARSGASVG IDDMVIPEKK HEIISEAEAE 660
  661 VAEIQEQFQS GLVTAGERYN KVIDIWAAAN DRVSKAMMDN LQTETVINRD GQEEQQVSFN 720
  721 SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR 780
  781 KGLADTALKT ANSGYLTRRL VDVAQDLVVT EDDCGTHEGI LMTPVIEGGD VKEPLRDRVL 840
  841 GRVTAEDVLK PGTADILVPR NTLLHEQWCD LLEANSVDAV KVRSVVSCDT DFGVCAHCYG 900
  901 RDLARGHIIN KGEAIGVIAA QSIGEPGTQL TMRTFHIGGA ASRAAAESSI QVKNKGSIKL 960
  961 SNVKSVVNSS GKLVITSRNT ELKLIDEFGR TKESYKVPYG AVMAKGDGEQ VAGGETVANW1020
 1021 DPHTMPVITE VSGFIRFTDM IDGQTITRQT DELTGLSSLV VLDSAERTTG GKDLRPALKI1080
 1081 VDAQGNDVLI PGTDMPAQYF LPGKAIVQLE DGVQISSGDT LARIPQESGG TKDITGGLPR1140
 1141 VADLFEARRP KEPAILAEIA GIVSFGKETK GKRRLVITPV DGSDPYEEMI PKWRQLNVFE1200
 1201 GERVERGDVI SDGPEAPHDI LRLRGVHAVT RYIVNEVQDV YRLQGVKIND KHIEVIVRQM1260
 1261 LRKATIESAG SSDFLEGEQV EYSRVKIANR ELEANGKVGA TFSRDLLGIT KASLATESFI1320
 1321 SAASFQETTR VLTEAAVAGK RDELRGLKEN VIVGRLIPAG TGYAYHQDRM RRRAAGEQPA1380
 1381 TPQVTAEDAS ASLAELLNAG LGGSDNE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..1201] PSI-BLAST 1000.0 No description for 2ghoD was found.
    2 View Details [1202..1407] MSA 6.202968 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-directed RNA polymerase activity
    		•  10.2021663255698 bayes_pls_golite062009
  • RNA polymerase activity
    		•  10.2021663255698 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  7.6240729546188 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  5.44374972993429 bayes_pls_golite062009
  • transferase activity
    		•  4.83218811360621 bayes_pls_golite062009
  • binding
    		•  1.61743849829314 bayes_pls_golite062009
  • catalytic activity
    		•  1.36406839864424 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.30860843987842 bayes_pls_golite062009
  • DNA binding
    		•  1.06504127306982 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.04375863237637 bayes_pls_golite062009
  • protein binding
    		•  0.251709363216351 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle