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Protein Overview: gi|168797658, gi...

General Information:
Name(s) found: gi|189379826 [NCBI NR]
gi|168797658 [NCBI NR]
Description(s) found:
Found 2 descriptions.
SHOW ALL
  • gi|189379826|gb|EDU98242.1| DNA primase [Escherichia coli O157:H7 str. EC508] [NCBI NR]
  • gi|168797658|ref|ZP_02822665.1| DNA primase [Escherichia coli O157:H7 str. EC508] [NCBI NR]
    • Organism: Escherichia coli O157:H7 str. EC508
    Length: 581 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRIPRVFI NDLLARTDIV DLIDARVKLK KQGKNFHACC PFHNEKTPSF TVNGEKQFYH  60
   61 CFGCGAHGNA IDFLMNYDKL EFVETVEELA AMHNLEVPFE AGSGPSQIER HQRQTLYQLM 120
  121 DGLNTFYQQS LQQPVATSAR QYLEKRGLSH EVIARFAIGF APPGWDNVLK RFGGNPENRQ 180
  181 SLIDAGMLVT NDQGRSYDRF RERVMFPIRD KRGRVIGFGG RVLGNDTPKY LNSPETDIFH 240
  241 KGRQLYGLYE AQQDNAEPNR LLVVEGYMDV VALAQYGINY AVASLGTSTT ADHIQLLFRA 300
  301 TNNVICCYDG DRAGRDAAWR ALETALPYMT DGRQLRFMFL PDGEDPDTLV RKEGKEAFEA 360
  361 RMEQAMPLSA FLFNSLMPQV DLSTPDGRAR LSTLALPLIS QVPGETLRIY LRQELGNKLG 420
  421 ILDDSQLERL MPKAAESGVS RPVPQLKRTT MRILIGLLVQ NPELATLVPP LENLDENKLP 480
  481 GLGLFRELVN TCLSQPGLTT GQLLEHYRGT NNAATLEKLS MWDDIADKNI AEQTFTDSLN 540
  541 HMFDSLLELR QEELIARERT HGLSNEERLE LWTLNQELAK K

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..105] PSI-BLAST 35.154902 Zinc-binding domain of DNA primase
    2 View Details [106..444] PSI-BLAST 83.0 DNA primase DnaG catalytic core
    3 View Details [445..581] PSI-BLAST 27.0 Crystal Structure of the E.coli DnaG C-terminal domain (residues 434 to 581)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA primase activity
    		•  9.73419395042405 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.46382129825313 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  3.39768224850127 bayes_pls_golite062009
  • RNA polymerase activity
    		•  3.39768224850127 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  3.28799371541043 bayes_pls_golite062009
  • binding
    		•  2.62275087285714 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.95935440221316 bayes_pls_golite062009
  • DNA binding
    		•  1.92092218509957 bayes_pls_golite062009
  • transcription elongation regulator activity
    		•  1.49626290953998 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.23314259311645 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.730134088263314 bayes_pls_golite062009
  • catalytic activity
    		•  0.434839928397784 bayes_pls_golite062009
  • protein binding
    		•  0.265222284938592 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.240481799431949 bayes_pls_golite062009
    2
    Term Confidence Notes
  • DNA primase activity
    		•  11.9648478190162 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  4.35308216592295 bayes_pls_golite062009
  • RNA polymerase activity
    		•  4.35308216592295 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  4.2392655850006 bayes_pls_golite062009
  • binding
    		•  2.46518385502315 bayes_pls_golite062009
  • catalytic activity
    		•  1.39967796334655 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.17252562283519 bayes_pls_golite062009
  • transferase activity
    		•  0.605239890876961 bayes_pls_golite062009
  • protein binding
    		•  0.11913220264667 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle